Sopen08g003840

Description : S1 RNA binding domain

Gene families : OG_42_0008024 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008024_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen08g003840
Cluster	HCCA clusters: Cluster_71

Target	Alias	Description	ECC score	Gene Family Method
Bradi3g01450	No alias	Nucleic acid-binding, OB-fold-like protein	0.05	Orthogroups_2024-Update
GRMZM2G088114	No alias	Nucleic acid-binding, OB-fold-like protein	0.02	Orthogroups_2024-Update
Glyma.05G205700	No alias	Nucleic acid-binding, OB-fold-like protein	0.03	Orthogroups_2024-Update
Pp1s66_129V6	No alias	rna binding s1	0.03	Orthogroups_2024-Update
Seita.1G117300.1	No alias	Unknown function	0.04	Orthogroups_2024-Update
Sobic.004G011300.1	No alias	Unknown function	0.05	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003029	S1_domain	753	825

External Links

No external refs found!