1. Home
  2. Species
  3. Solanum lycopersicum
  4. Sequence
  5. Solyc02g080910

Solyc02g080910


Description : Pectate lyase (AHRD V3.3 *** K4B9W1_SOLLC)


Gene families : OG_42_0000086 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000086_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc02g080910
Cluster HCCA clusters: Cluster_173

Target Alias Description ECC score Gene Family Method Actions
A4A49_23917 No alias putative pectate lyase 13 0.03 Orthogroups_2024-Update
A4A49_40134 No alias putative pectate lyase p59 0.02 Orthogroups_2024-Update
At1g30350 No alias Probable pectate lyase 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8G4] 0.04 Orthogroups_2024-Update
At5g09280 No alias Pectate lyase [Source:UniProtKB/TrEMBL;Acc:Q9FY87] 0.05 Orthogroups_2024-Update
Bradi3g08035 No alias Pectate lyase family protein 0.03 Orthogroups_2024-Update
Brara.G01649.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.02 Orthogroups_2024-Update
Brara.I03611.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.02 Orthogroups_2024-Update
Glyma.08G296900 No alias Pectate lyase family protein 0.02 Orthogroups_2024-Update
Glyma.17G126500 No alias Pectin lyase-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.18G255900 No alias Pectate lyase family protein 0.03 Orthogroups_2024-Update
HORVU2Hr1G002880.2 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.02 Orthogroups_2024-Update
MA_10394547g0010 No alias (at4g22090 : 188.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
MA_10430145g0020 No alias (at5g48900 : 488.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
MA_203992g0010 No alias (at4g24780 : 544.0) Pectin lyase-like superfamily... 0.03 Orthogroups_2024-Update
Potri.006G122000 No alias Pectin lyase-like superfamily protein 0.02 Orthogroups_2024-Update
Potri.008G032700 No alias Pectin lyase-like superfamily protein 0.04 Orthogroups_2024-Update
Potri.011G008100 No alias root hair specific 14 0.02 Orthogroups_2024-Update
Seita.7G017900.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
Sobic.003G322800.1 No alias pectate lyase & EC_4.2 carbon-oxygen lyase 0.03 Orthogroups_2024-Update
Solyc03g058890 No alias Pectate lyase (AHRD V3.3 *** K4BGT7_SOLLC) 0.03 Orthogroups_2024-Update
Solyc06g083580 No alias Pectate lyase (AHRD V3.3 *** A0A022QXK5_ERYGU) 0.03 Orthogroups_2024-Update
Sopen01g006390 No alias Pectate lyase 0.02 Orthogroups_2024-Update
Sopen05g033960 No alias Pectate lyase 0.03 Orthogroups_2024-Update
Sopen06g034960 No alias Pectate lyase 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP Predicted GO
CC GO:0000159 protein phosphatase type 2A complex IEP Predicted GO
MF GO:0000702 oxidized base lesion DNA N-glycosylase activity IEP Predicted GO
MF GO:0003684 damaged DNA binding IEP Predicted GO
MF GO:0004601 peroxidase activity IEP Predicted GO
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Predicted GO
BP GO:0006284 base-excision repair IEP Predicted GO
BP GO:0006289 nucleotide-excision repair IEP Predicted GO
BP GO:0006473 protein acetylation IEP Predicted GO
BP GO:0006475 internal protein amino acid acetylation IEP Predicted GO
BP GO:0006950 response to stress IEP Predicted GO
BP GO:0006979 response to oxidative stress IEP Predicted GO
CC GO:0008287 protein serine/threonine phosphatase complex IEP Predicted GO
MF GO:0008534 oxidized purine nucleobase lesion DNA N-glycosylase activity IEP Predicted GO
MF GO:0016209 antioxidant activity IEP Predicted GO
BP GO:0016569 covalent chromatin modification IEP Predicted GO
BP GO:0016570 histone modification IEP Predicted GO
BP GO:0016573 histone acetylation IEP Predicted GO
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Predicted GO
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Predicted GO
BP GO:0018205 peptidyl-lysine modification IEP Predicted GO
BP GO:0018393 internal peptidyl-lysine acetylation IEP Predicted GO
BP GO:0018394 peptidyl-lysine acetylation IEP Predicted GO
MF GO:0019104 DNA N-glycosylase activity IEP Predicted GO
MF GO:0019208 phosphatase regulator activity IEP Predicted GO
MF GO:0019888 protein phosphatase regulator activity IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
CC GO:0031248 protein acetyltransferase complex IEP Predicted GO
BP GO:0043543 protein acylation IEP Predicted GO
BP GO:0043631 RNA polyadenylation IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0070566 adenylyltransferase activity IEP Predicted GO
CC GO:1902493 acetyltransferase complex IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
CC GO:1903293 phosphatase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002022 Pec_lyase 119 306
IPR002022 Pec_lyase 496 682
No external refs found!