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  5. Sopen08g018310

Sopen08g018310


Description : DEAD/DEAH box helicase


Gene families : OG_42_0000623 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000623_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen08g018310
Cluster HCCA clusters: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
143895 No alias eukaryotic translation initiation factor 4A1 0.09 Orthogroups_2024-Update
A4A49_62264 No alias eukaryotic initiation factor 4a-11 0.03 Orthogroups_2024-Update
At1g54270 No alias eIF4A-2 [Source:UniProtKB/TrEMBL;Acc:A0A178W4U1] 0.05 Orthogroups_2024-Update
At1g72730 No alias Eukaryotic initiation factor 4A-3... 0.03 Orthogroups_2024-Update
At3g19760 No alias Eukaryotic initiation factor 4A-III homolog... 0.04 Orthogroups_2024-Update
Brara.A02854.1 No alias helicase component *(eIF4A3) of RNA quality control Exon... 0.04 Orthogroups_2024-Update
Brara.A03225.1 No alias mRNA unwinding factor *(eIF4A)) 0.05 Orthogroups_2024-Update
Brara.B02039.1 No alias mRNA unwinding factor *(eIF4A)) 0.03 Orthogroups_2024-Update
Brara.E02231.1 No alias helicase component *(eIF4A3) of RNA quality control Exon... 0.18 Orthogroups_2024-Update
Glyma.09G052500 No alias eukaryotic initiation factor 4A-III 0.04 Orthogroups_2024-Update
Glyma.13G106200 No alias eukaryotic translation initiation factor 4A1 0.03 Orthogroups_2024-Update
Glyma.15G026100 No alias eif4a-2 0.04 Orthogroups_2024-Update
Glyma.17G053200 No alias eif4a-2 0.02 Orthogroups_2024-Update
Mp2g02760.1 No alias mRNA unwinding factor (eIF4A) 0.1 Orthogroups_2024-Update
Pp1s31_150V6 No alias Eukaryotic initiation factor 4A-9 (ATP-dependent RNA... 0.04 Orthogroups_2024-Update
Pp1s77_16V6 No alias No description available 0.05 Orthogroups_2024-Update
Seita.4G242200.1 No alias mRNA unwinding factor *(eIF4A)) 0.2 Orthogroups_2024-Update
Sobic.010G251100.1 No alias mRNA unwinding factor *(eIF4A)) 0.03 Orthogroups_2024-Update
Solyc08g062800 No alias RNA helicase DEAD26 0.17 Orthogroups_2024-Update
Solyc11g033280 No alias Dead box ATP-dependent RNA helicase, putative (AHRD V3.3... 0.1 Orthogroups_2024-Update
Sopen12g031880 No alias DEAD/DEAH box helicase 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001650 Helicase_C 266 374
IPR011545 DEAD/DEAH_box_helicase_dom 65 226
No external refs found!