Sopen08g022190

Description : RNA polymerase I-associated factor PAF67

Gene families : OG_42_0004802 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004802_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen08g022190
Cluster	HCCA clusters: Cluster_58

Target	Alias	Description	ECC score	Gene Family Method
Brara.F02756.1	No alias	component *(eIF3l) of eIF3 mRNA-to-PIC binding complex	0.08	Orthogroups_2024-Update
Cre17.g697450	No alias	RNA polymerase I-associated factor PAF67	0.03	Orthogroups_2024-Update
Glyma.04G080800	No alias	RNA polymerase I-associated factor PAF67	0.06	Orthogroups_2024-Update
HORVU3Hr1G031330.1	No alias	component *(eIF3l) of eIF3 mRNA-to-PIC binding complex	0.09	Orthogroups_2024-Update
Mp3g02920.1	No alias	component eIF3l of eIF3 mRNA-to-PIC binding complex	0.02	Orthogroups_2024-Update
PSME_00024021-RA	No alias	(at5g25757 : 703.0) RNA polymerase I-associated factor...	0.02	Orthogroups_2024-Update
Potri.006G241300	No alias	RNA polymerase I-associated factor PAF67	0.07	Orthogroups_2024-Update
Pp1s367_2V6	No alias	T5I5.1; expressed protein [Arabidopsis thaliana]	0.02	Orthogroups_2024-Update
Seita.5G008800.1	No alias	component *(eIF3l) of eIF3 mRNA-to-PIC binding complex	0.07	Orthogroups_2024-Update
Sobic.003G008600.1	No alias	component *(eIF3l) of eIF3 mRNA-to-PIC binding complex	0.1	Orthogroups_2024-Update
Solyc08g068340	No alias	Eukaryotic translation initiation factor 3 subunit L...	0.26	Orthogroups_2024-Update
evm.model.contig_2044.8	No alias	(at5g25757 : 381.0) RNA polymerase I-associated factor...	0.02	Orthogroups_2024-Update
evm.model.tig00022075.15	No alias	(at5g25757 : 366.0) RNA polymerase I-associated factor...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003743	translation initiation factor activity	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IEA	InterProScan predictions
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEA	InterProScan predictions
MF	GO:0008135	translation factor activity, RNA binding	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR019382	eIF3l	108	503

External Links

No external refs found!