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  5. Sopen08g023720

Sopen08g023720


Description : Ribosomal L30 N-terminal domain


Gene families : OG_42_0001114 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001114_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen08g023720
Cluster HCCA clusters: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
103994 No alias Ribosomal protein L30/L7 family protein 0.2 Orthogroups_2024-Update
A4A49_32887 No alias 60s ribosomal protein l7-1 0.06 Orthogroups_2024-Update
A4A49_59282 No alias 60s ribosomal protein l7-2 0.05 Orthogroups_2024-Update
AC190609.3_FG003 No alias Ribosomal protein L30/L7 family protein 0.05 Orthogroups_2024-Update
At1g80750 No alias 60S ribosomal protein L7-1... 0.05 Orthogroups_2024-Update
At2g01250 No alias 60S ribosomal protein L7-2... 0.04 Orthogroups_2024-Update
At3g13580 No alias Ribosomal protein L30/L7 family protein... 0.07 Orthogroups_2024-Update
Bradi1g04950 No alias Ribosomal protein L30/L7 family protein 0.18 Orthogroups_2024-Update
Bradi5g20900 No alias Ribosomal protein L30/L7 family protein 0.18 Orthogroups_2024-Update
Brara.B02397.1 No alias component *(uL30) of large ribosomal-subunit (LSU) proteome 0.05 Orthogroups_2024-Update
Brara.B03026.1 No alias component *(uL30) of large ribosomal-subunit (LSU) proteome 0.22 Orthogroups_2024-Update
Brara.C02245.1 No alias component *(uL30) of large ribosomal-subunit (LSU) proteome 0.06 Orthogroups_2024-Update
Brara.D02679.1 No alias component *(uL30) of large ribosomal-subunit (LSU) proteome 0.16 Orthogroups_2024-Update
Brara.F03496.1 No alias component *(uL30) of large ribosomal-subunit (LSU) proteome 0.29 Orthogroups_2024-Update
Brara.G02051.1 No alias component *(uL30) of large ribosomal-subunit (LSU) proteome 0.07 Orthogroups_2024-Update
Brara.I02011.1 No alias component *(uL30) of large ribosomal-subunit (LSU) proteome 0.24 Orthogroups_2024-Update
Cre12.g537800 No alias Ribosomal protein L30/L7 family protein 0.15 Orthogroups_2024-Update
GRMZM2G100225 No alias Ribosomal protein L30/L7 family protein 0.03 Orthogroups_2024-Update
GRMZM2G107336 No alias Ribosomal protein L30/L7 family protein 0.03 Orthogroups_2024-Update
GRMZM5G868433 No alias Ribosomal protein L30/L7 family protein 0.13 Orthogroups_2024-Update
Glyma.07G020000 No alias Ribosomal protein L30/L7 family protein 0.11 Orthogroups_2024-Update
Glyma.08G222100 No alias Ribosomal protein L30/L7 family protein 0.12 Orthogroups_2024-Update
Glyma.09G061000 No alias Ribosomal protein L30/L7 family protein 0.1 Orthogroups_2024-Update
Glyma.15G167400 No alias Ribosomal protein L30/L7 family protein 0.1 Orthogroups_2024-Update
Glyma.16G036200 No alias Ribosomal protein L30/L7 family protein 0.03 Orthogroups_2024-Update
HORVU2Hr1G100970.4 No alias component *(uL30) of large ribosomal-subunit (LSU) proteome 0.05 Orthogroups_2024-Update
HORVU5Hr1G108990.2 No alias component *(uL30) of large ribosomal-subunit (LSU) proteome 0.19 Orthogroups_2024-Update
Kfl00380_0050 kfl00380_0050_v1.1 (at2g01250 : 349.0) Ribosomal protein L30/L7 family... 0.08 Orthogroups_2024-Update
LOC_Os08g42920 No alias 60S ribosomal protein L7, putative, expressed 0.04 Orthogroups_2024-Update
MA_109845g0010 No alias (at2g01250 : 278.0) Ribosomal protein L30/L7 family... 0.07 Orthogroups_2024-Update
MA_47548g0010 No alias (at2g01250 : 324.0) Ribosomal protein L30/L7 family... 0.12 Orthogroups_2024-Update
Mp3g13040.1 No alias component RPL7 of LSU proteome component 0.14 Orthogroups_2024-Update
PSME_00002449-RA No alias (at2g01250 : 310.0) Ribosomal protein L30/L7 family... 0.05 Orthogroups_2024-Update
PSME_00040767-RA No alias (at2g01250 : 333.0) Ribosomal protein L30/L7 family... 0.12 Orthogroups_2024-Update
PSME_00042409-RA No alias (at2g01250 : 328.0) Ribosomal protein L30/L7 family... 0.08 Orthogroups_2024-Update
Potri.006G073200 No alias Ribosomal protein L30/L7 family protein 0.07 Orthogroups_2024-Update
Potri.008G008000 No alias Ribosomal protein L30/L7 family protein 0.12 Orthogroups_2024-Update
Potri.010G250900 No alias Ribosomal protein L30/L7 family protein 0.07 Orthogroups_2024-Update
Potri.018G140300 No alias Ribosomal protein L30/L7 family protein 0.1 Orthogroups_2024-Update
Pp1s11_173V6 No alias 60s ribosomal protein l7-1 0.05 Orthogroups_2024-Update
Pp1s243_40V6 No alias 60s ribosomal protein l7-2 0.14 Orthogroups_2024-Update
Pp1s7_369V6 No alias 60s ribosomal protein l7-2 0.14 Orthogroups_2024-Update
Seita.1G117100.1 No alias component *(uL30) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Seita.6G017200.1 No alias component *(uL30) of large ribosomal-subunit (LSU) proteome 0.18 Orthogroups_2024-Update
Seita.6G231500.1 No alias component *(uL30) of large ribosomal-subunit (LSU) proteome 0.05 Orthogroups_2024-Update
Seita.7G228400.1 No alias component *(uL30) of large ribosomal-subunit (LSU) proteome 0.25 Orthogroups_2024-Update
Sobic.007G085000.2 No alias component *(uL30) of large ribosomal-subunit (LSU) proteome 0.02 Orthogroups_2024-Update
Sobic.007G085001.1 No alias component *(uL30) of large ribosomal-subunit (LSU) proteome 0.23 Orthogroups_2024-Update
Sobic.007G184400.1 No alias component *(uL30) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Solyc03g117060 No alias 60S ribosomal protein L7 (AHRD V3.3 *** B9GMC3_POPTR) 0.03 Orthogroups_2024-Update
Solyc06g068400 No alias 60S ribosomal protein L7 (AHRD V3.3 *** B9GMC3_POPTR) 0.14 Orthogroups_2024-Update
Solyc07g008370 No alias 60S ribosomal protein L7 (AHRD V3.3 *** A0A072VPV6_MEDTR) 0.29 Orthogroups_2024-Update
Solyc08g075090 No alias bHLH transcription factor144 0.27 Orthogroups_2024-Update
evm.model.contig_2085.3 No alias (at3g13580 : 237.0) Ribosomal protein L30/L7 family... 0.3 Orthogroups_2024-Update
evm.model.tig00020909.42 No alias (at2g44120 : 205.0) Ribosomal protein L30/L7 family... 0.21 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR012988 Ribosomal_L30_N 288 359
IPR016082 Ribosomal_L30_ferredoxin-like 364 414
IPR011598 bHLH_dom 192 237
No external refs found!