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Description : Glycosyl hydrolases family 28
Gene families : OG_42_0000259 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000259_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Solanum release: Sopen08g030460 | |
| Cluster | HCCA clusters: Cluster_118 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| 78556 | No alias | Pectin lyase-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
| A4A49_18383 | No alias | putative polygalacturonase | 0.02 | Orthogroups_2024-Update | |
| At3g48950 | No alias | Endo-polygalacturonase-like protein... | 0.03 | Orthogroups_2024-Update | |
| Bradi1g52050 | No alias | Pectin lyase-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Bradi3g09597 | No alias | Pectin lyase-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Brara.A01388.1 | No alias | EC_3.2 glycosylase | 0.03 | Orthogroups_2024-Update | |
| Brara.F01639.1 | No alias | EC_3.2 glycosylase | 0.03 | Orthogroups_2024-Update | |
| GRMZM2G174598 | No alias | Pectin lyase-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Glyma.09G071500 | No alias | Pectin lyase-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Glyma.10G016100 | No alias | Pectin lyase-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Glyma.18G236700 | No alias | Pectin lyase-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Glyma.19G213400 | No alias | Pectin lyase-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Potri.003G131700 | No alias | Pectin lyase-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Potri.006G139500 | No alias | Pectin lyase-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Potri.008G211500 | No alias | Pectin lyase-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Solyc08g082170 | No alias | Pectin lyase-like superfamily protein (AHRD V3.3 ***... | 0.05 | Orthogroups_2024-Update | |
| Sopen09g030250 | No alias | Glycosyl hydrolases family 28 | 0.02 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004650 | polygalacturonase activity | IEA | InterProScan predictions |
| BP | GO:0005975 | carbohydrate metabolic process | IEA | InterProScan predictions |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR000743 | Glyco_hydro_28 | 143 | 420 |
| No external refs found! |