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  5. Sopen09g002410

Sopen09g002410


Description : tRNA synthetases class I (I, L, M and V)


Gene families : OG_42_0001575 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001575_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen09g002410
Cluster HCCA clusters: Cluster_110

Target Alias Description ECC score Gene Family Method Actions
Brara.I04978.1 No alias EC_6.1 ligase forming carbon-oxygen bond & valine-tRNA ligase 0.02 Orthogroups_2024-Update
Brara.J01858.1 No alias EC_6.1 ligase forming carbon-oxygen bond & valine-tRNA ligase 0.03 Orthogroups_2024-Update
Cre12.g537100 No alias valyl-tRNA synthetase / valine--tRNA ligase (VALRS) 0.01 Orthogroups_2024-Update
Mp2g20730.1 No alias valine-tRNA ligase 0.01 Orthogroups_2024-Update
Sobic.007G054800.1 No alias EC_6.1 ligase forming carbon-oxygen bond & valine-tRNA ligase 0.02 Orthogroups_2024-Update
evm.model.tig00000402.37 No alias (at5g16715 : 948.0) embryo defective 2247 (EMB2247);... 0.01 Orthogroups_2024-Update
evm.model.tig00001130.5 No alias (at1g14610 : 789.0) Required for proper proliferation of... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA InterProScan predictions
MF GO:0004812 aminoacyl-tRNA ligase activity IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
BP GO:0006418 tRNA aminoacylation for protein translation IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR013155 M/V/L/I-tRNA-synth_anticd-bd 788 929
IPR002300 aa-tRNA-synth_Ia 119 742
No external refs found!