Sopen09g003260

Description : Zinc-ribbon

Gene families : OG_42_0001040 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001040_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen09g003260
Cluster	HCCA clusters: Cluster_199

Target	Alias	Description	ECC score	Gene Family Method	Actions
MA_10436725g0010	No alias	(at5g22920 : 398.0) CHY-type/CTCHY-type/RING-type Zinc...	0.03	Orthogroups_2024-Update
Solyc01g067360	No alias	CHY-type/CTCHY-type/RING-type Zinc finger protein (AHRD...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0008270	zinc ion binding	IEA	InterProScan predictions
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001841	Znf_RING	165	208
IPR008913	Znf_CHY	30	111
IPR039512	RCHY1_zinc-ribbon	213	271

External Links

No external refs found!