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  5. Sopen09g005190

Sopen09g005190


Description : PPR repeat family


Gene families : OG_42_0008298 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008298_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen09g005190
Cluster HCCA clusters: Cluster_71

Target Alias Description ECC score Gene Family Method Actions
Bradi4g14080 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
HORVU5Hr1G093450.2 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.9G185600.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Sobic.001G188600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc09g010450 No alias Pentatricopeptide repeat (PPR) superfamily protein (AHRD... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 275 321
IPR002885 Pentatricopeptide_repeat 483 531
IPR002885 Pentatricopeptide_repeat 552 601
IPR002885 Pentatricopeptide_repeat 412 460
IPR002885 Pentatricopeptide_repeat 342 391
IPR002885 Pentatricopeptide_repeat 626 670
IPR002885 Pentatricopeptide_repeat 203 249
IPR002885 Pentatricopeptide_repeat 170 200
No external refs found!