Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Glycine release: Glyma.01G048100 | |
Cluster | HCCA clusters: Cluster_318 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
51483 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
84657 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.01 | Orthogroups_2024-Update | |
A4A49_13653 | No alias | pentatricopeptide repeat-containing protein | 0.03 | Orthogroups_2024-Update | |
Bradi1g56040 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
Bradi2g45250 | No alias | mitochondrial RNAediting factor 1 | 0.02 | Orthogroups_2024-Update | |
Bradi3g32220 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Brara.A02809.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Brara.E00818.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Brara.F01301.1 | No alias | RNA editing factor *(OTP970) | 0.06 | Orthogroups_2024-Update | |
Glyma.01G173200 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.15G093800 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.18G275000 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
HORVU2Hr1G028520.2 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
LOC_Os02g34700 | No alias | expressed protein | 0.02 | Orthogroups_2024-Update | |
MA_10429837g0010 | No alias | (at1g11290 : 623.0) Pentatricopeptide Repeat Protein... | 0.02 | Orthogroups_2024-Update | |
MA_322292g0010 | No alias | (at4g18750 : 684.0) Encodes a pentatricopeptide (PPR)... | 0.02 | Orthogroups_2024-Update | |
MA_43615g0010 | No alias | (at1g11290 : 687.0) Pentatricopeptide Repeat Protein... | 0.02 | Orthogroups_2024-Update | |
MA_81514g0010 | No alias | (at1g11290 : 694.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
MA_83898g0010 | No alias | (at1g11290 : 636.0) Pentatricopeptide Repeat Protein... | 0.02 | Orthogroups_2024-Update | |
PSME_00002375-RA | No alias | (at3g03580 : 696.0) Tetratricopeptide repeat (TPR)-like... | 0.02 | Orthogroups_2024-Update | |
PSME_00005383-RA | No alias | (at3g12770 : 329.0) Encodes a pentatricopeptide repeat... | 0.01 | Orthogroups_2024-Update | |
PSME_00013106-RA | No alias | (at4g13650 : 681.0) Pentatricopeptide repeat (PPR)... | 0.02 | Orthogroups_2024-Update | |
PSME_00014882-RA | No alias | (at4g13650 : 307.0) Pentatricopeptide repeat (PPR)... | 0.01 | Orthogroups_2024-Update | |
PSME_00032333-RA | No alias | (at4g18750 : 689.0) Encodes a pentatricopeptide (PPR)... | 0.02 | Orthogroups_2024-Update | |
Potri.004G071800 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Seita.3G006500.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Seita.9G375400.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.004G272600.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.006G114300.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Solyc01g112200 | No alias | Pentatricopeptide repeat-containing family protein (AHRD... | 0.03 | Orthogroups_2024-Update | |
Solyc03g114660 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.03 | Orthogroups_2024-Update | |
Solyc11g005970 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.03 | Orthogroups_2024-Update | |
Sopen01g039430 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
Sopen02g018640 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
Sopen02g019790 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
Sopen03g033730 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update | |
Sopen03g038830 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
Sopen07g003070 | No alias | PPR repeat | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000062 | fatty-acyl-CoA binding | IEP | Predicted GO |
BP | GO:0000272 | polysaccharide catabolic process | IEP | Predicted GO |
MF | GO:0003905 | alkylbase DNA N-glycosylase activity | IEP | Predicted GO |
MF | GO:0004672 | protein kinase activity | IEP | Predicted GO |
MF | GO:0004806 | triglyceride lipase activity | IEP | Predicted GO |
MF | GO:0004842 | ubiquitin-protein transferase activity | IEP | Predicted GO |
CC | GO:0005634 | nucleus | IEP | Predicted GO |
CC | GO:0005672 | transcription factor TFIIA complex | IEP | Predicted GO |
BP | GO:0005984 | disaccharide metabolic process | IEP | Predicted GO |
BP | GO:0005991 | trehalose metabolic process | IEP | Predicted GO |
BP | GO:0005992 | trehalose biosynthetic process | IEP | Predicted GO |
BP | GO:0006284 | base-excision repair | IEP | Predicted GO |
BP | GO:0006352 | DNA-templated transcription, initiation | IEP | Predicted GO |
BP | GO:0006367 | transcription initiation from RNA polymerase II promoter | IEP | Predicted GO |
BP | GO:0006464 | cellular protein modification process | IEP | Predicted GO |
BP | GO:0006468 | protein phosphorylation | IEP | Predicted GO |
BP | GO:0006766 | vitamin metabolic process | IEP | Predicted GO |
BP | GO:0006767 | water-soluble vitamin metabolic process | IEP | Predicted GO |
BP | GO:0006771 | riboflavin metabolic process | IEP | Predicted GO |
BP | GO:0006793 | phosphorus metabolic process | IEP | Predicted GO |
BP | GO:0006796 | phosphate-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | Predicted GO |
BP | GO:0006873 | cellular ion homeostasis | IEP | Predicted GO |
BP | GO:0006875 | cellular metal ion homeostasis | IEP | Predicted GO |
BP | GO:0006879 | cellular iron ion homeostasis | IEP | Predicted GO |
BP | GO:0008150 | biological_process | IEP | Predicted GO |
MF | GO:0008199 | ferric iron binding | IEP | Predicted GO |
MF | GO:0008686 | 3,4-dihydroxy-2-butanone-4-phosphate synthase activity | IEP | Predicted GO |
MF | GO:0008725 | DNA-3-methyladenine glycosylase activity | IEP | Predicted GO |
MF | GO:0008883 | glutamyl-tRNA reductase activity | IEP | Predicted GO |
BP | GO:0009110 | vitamin biosynthetic process | IEP | Predicted GO |
BP | GO:0009231 | riboflavin biosynthetic process | IEP | Predicted GO |
BP | GO:0009311 | oligosaccharide metabolic process | IEP | Predicted GO |
BP | GO:0009312 | oligosaccharide biosynthetic process | IEP | Predicted GO |
BP | GO:0009987 | cellular process | IEP | Predicted GO |
BP | GO:0016051 | carbohydrate biosynthetic process | IEP | Predicted GO |
MF | GO:0016160 | amylase activity | IEP | Predicted GO |
MF | GO:0016161 | beta-amylase activity | IEP | Predicted GO |
MF | GO:0016298 | lipase activity | IEP | Predicted GO |
MF | GO:0016301 | kinase activity | IEP | Predicted GO |
BP | GO:0016310 | phosphorylation | IEP | Predicted GO |
BP | GO:0016567 | protein ubiquitination | IEP | Predicted GO |
MF | GO:0016772 | transferase activity, transferring phosphorus-containing groups | IEP | Predicted GO |
MF | GO:0016773 | phosphotransferase activity, alcohol group as acceptor | IEP | Predicted GO |
MF | GO:0016799 | hydrolase activity, hydrolyzing N-glycosyl compounds | IEP | Predicted GO |
BP | GO:0018130 | heterocycle biosynthetic process | IEP | Predicted GO |
MF | GO:0019104 | DNA N-glycosylase activity | IEP | Predicted GO |
MF | GO:0019787 | ubiquitin-like protein transferase activity | IEP | Predicted GO |
BP | GO:0030003 | cellular cation homeostasis | IEP | Predicted GO |
BP | GO:0032446 | protein modification by small protein conjugation | IEP | Predicted GO |
BP | GO:0034637 | cellular carbohydrate biosynthetic process | IEP | Predicted GO |
BP | GO:0036211 | protein modification process | IEP | Predicted GO |
BP | GO:0042364 | water-soluble vitamin biosynthetic process | IEP | Predicted GO |
BP | GO:0042726 | flavin-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0042727 | flavin-containing compound biosynthetic process | IEP | Predicted GO |
BP | GO:0043170 | macromolecule metabolic process | IEP | Predicted GO |
BP | GO:0043412 | macromolecule modification | IEP | Predicted GO |
MF | GO:0043733 | DNA-3-methylbase glycosylase activity | IEP | Predicted GO |
BP | GO:0044237 | cellular metabolic process | IEP | Predicted GO |
BP | GO:0044238 | primary metabolic process | IEP | Predicted GO |
BP | GO:0044249 | cellular biosynthetic process | IEP | Predicted GO |
BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Predicted GO |
BP | GO:0044267 | cellular protein metabolic process | IEP | Predicted GO |
CC | GO:0044798 | nuclear transcription factor complex | IEP | Predicted GO |
BP | GO:0046351 | disaccharide biosynthetic process | IEP | Predicted GO |
BP | GO:0046916 | cellular transition metal ion homeostasis | IEP | Predicted GO |
BP | GO:0048878 | chemical homeostasis | IEP | Predicted GO |
BP | GO:0050801 | ion homeostasis | IEP | Predicted GO |
MF | GO:0052689 | carboxylic ester hydrolase activity | IEP | Predicted GO |
BP | GO:0055065 | metal ion homeostasis | IEP | Predicted GO |
BP | GO:0055072 | iron ion homeostasis | IEP | Predicted GO |
BP | GO:0055076 | transition metal ion homeostasis | IEP | Predicted GO |
BP | GO:0055080 | cation homeostasis | IEP | Predicted GO |
BP | GO:0055082 | cellular chemical homeostasis | IEP | Predicted GO |
BP | GO:0070647 | protein modification by small protein conjugation or removal | IEP | Predicted GO |
BP | GO:0071704 | organic substance metabolic process | IEP | Predicted GO |
CC | GO:0090575 | RNA polymerase II transcription factor complex | IEP | Predicted GO |
BP | GO:0098771 | inorganic ion homeostasis | IEP | Predicted GO |
MF | GO:0140096 | catalytic activity, acting on a protein | IEP | Predicted GO |
BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | Predicted GO |
MF | GO:1901567 | fatty acid derivative binding | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 275 | 300 |
IPR002885 | Pentatricopeptide_repeat | 136 | 165 |
IPR002885 | Pentatricopeptide_repeat | 376 | 399 |
IPR002885 | Pentatricopeptide_repeat | 442 | 469 |
IPR002885 | Pentatricopeptide_repeat | 407 | 431 |
IPR002885 | Pentatricopeptide_repeat | 301 | 347 |
IPR002885 | Pentatricopeptide_repeat | 199 | 246 |
IPR032867 | DYW_dom | 474 | 599 |
No external refs found! |