Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Glycine release: Glyma.01G234100 | |
Cluster | HCCA clusters: Cluster_358 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
At4g37380 | No alias | Pentatricopeptide repeat-containing protein ELI1,... | 0.03 | Orthogroups_2024-Update | |
At5g66520 | No alias | Pentatricopeptide repeat-containing protein At5g66520... | 0.04 | Orthogroups_2024-Update | |
Bradi3g41651 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
Brara.K01695.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Cre06.g298300 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
GRMZM2G462417 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.05G079500 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.06G057900 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.09G286100 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.14G224400 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
HORVU3Hr1G023070.1 | No alias | RNA editing factor *(OTP81) | 0.03 | Orthogroups_2024-Update | |
HORVU3Hr1G023090.1 | No alias | RNA editing factor *(OTP81) | 0.03 | Orthogroups_2024-Update | |
LOC_Os02g06880 | No alias | EMB2758, putative, expressed | 0.03 | Orthogroups_2024-Update | |
LOC_Os05g12130 | No alias | EMB2261, putative, expressed | 0.03 | Orthogroups_2024-Update | |
LOC_Os10g39460 | No alias | selenium-binding protein-like, putative, expressed | 0.03 | Orthogroups_2024-Update | |
LOC_Os12g08140 | No alias | pentatricopeptide, putative, expressed | 0.02 | Orthogroups_2024-Update | |
MA_10157572g0010 | No alias | (at4g18750 : 548.0) Encodes a pentatricopeptide (PPR)... | 0.03 | Orthogroups_2024-Update | |
MA_10164206g0010 | No alias | (at1g11290 : 670.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
MA_27726g0010 | No alias | (at1g15510 : 744.0) Encodes a pentatricopeptide repeat... | 0.03 | Orthogroups_2024-Update | |
MA_64083g0010 | No alias | (at1g11290 : 632.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
MA_94165g0010 | No alias | (at1g11290 : 612.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
PSME_00033354-RA | No alias | (at3g53360 : 430.0) Tetratricopeptide repeat (TPR)-like... | 0.02 | Orthogroups_2024-Update | |
PSME_00056680-RA | No alias | (at2g22070 : 511.0) pentatricopeptide (PPR)... | 0.03 | Orthogroups_2024-Update | |
PSME_00057248-RA | No alias | (at1g11290 : 733.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
Potri.003G088600 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Potri.012G041200 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Potri.015G034900 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Seita.1G102000.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Seita.9G057100.1 | No alias | RNA editing factor *(OTP85) | 0.03 | Orthogroups_2024-Update | |
Seita.9G548100.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.002G007000.2 | No alias | RNA editing factor *(ELI1) | 0.02 | Orthogroups_2024-Update | |
Sobic.010G153600.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Solyc01g095690 | No alias | Pentatricopeptide repeat-containing protein, putative... | 0.03 | Orthogroups_2024-Update | |
Solyc10g007940 | No alias | Pentatricopeptide repeat-containing family protein (AHRD... | 0.03 | Orthogroups_2024-Update | |
Sopen01g032600 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
Sopen01g039430 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
Sopen01g041720 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
Sopen02g026530 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
Sopen07g003070 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000155 | phosphorelay sensor kinase activity | IEP | Predicted GO |
MF | GO:0000166 | nucleotide binding | IEP | Predicted GO |
MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
MF | GO:0003824 | catalytic activity | IEP | Predicted GO |
MF | GO:0003989 | acetyl-CoA carboxylase activity | IEP | Predicted GO |
MF | GO:0004484 | mRNA guanylyltransferase activity | IEP | Predicted GO |
MF | GO:0004616 | phosphogluconate dehydrogenase (decarboxylating) activity | IEP | Predicted GO |
MF | GO:0004673 | protein histidine kinase activity | IEP | Predicted GO |
MF | GO:0004721 | phosphoprotein phosphatase activity | IEP | Predicted GO |
MF | GO:0005524 | ATP binding | IEP | Predicted GO |
BP | GO:0006081 | cellular aldehyde metabolic process | IEP | Predicted GO |
BP | GO:0006098 | pentose-phosphate shunt | IEP | Predicted GO |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0006298 | mismatch repair | IEP | Predicted GO |
BP | GO:0006370 | 7-methylguanosine mRNA capping | IEP | Predicted GO |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Predicted GO |
BP | GO:0006739 | NADP metabolic process | IEP | Predicted GO |
BP | GO:0006766 | vitamin metabolic process | IEP | Predicted GO |
BP | GO:0006767 | water-soluble vitamin metabolic process | IEP | Predicted GO |
BP | GO:0006771 | riboflavin metabolic process | IEP | Predicted GO |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | Predicted GO |
BP | GO:0006813 | potassium ion transport | IEP | Predicted GO |
BP | GO:0007165 | signal transduction | IEP | Predicted GO |
MF | GO:0008138 | protein tyrosine/serine/threonine phosphatase activity | IEP | Predicted GO |
MF | GO:0008144 | drug binding | IEP | Predicted GO |
BP | GO:0008150 | biological_process | IEP | Predicted GO |
MF | GO:0008192 | RNA guanylyltransferase activity | IEP | Predicted GO |
MF | GO:0008686 | 3,4-dihydroxy-2-butanone-4-phosphate synthase activity | IEP | Predicted GO |
BP | GO:0009058 | biosynthetic process | IEP | Predicted GO |
BP | GO:0009110 | vitamin biosynthetic process | IEP | Predicted GO |
BP | GO:0009231 | riboflavin biosynthetic process | IEP | Predicted GO |
BP | GO:0009314 | response to radiation | IEP | Predicted GO |
BP | GO:0009416 | response to light stimulus | IEP | Predicted GO |
BP | GO:0009452 | 7-methylguanosine RNA capping | IEP | Predicted GO |
BP | GO:0009581 | detection of external stimulus | IEP | Predicted GO |
BP | GO:0009582 | detection of abiotic stimulus | IEP | Predicted GO |
BP | GO:0009583 | detection of light stimulus | IEP | Predicted GO |
BP | GO:0009584 | detection of visible light | IEP | Predicted GO |
BP | GO:0009605 | response to external stimulus | IEP | Predicted GO |
BP | GO:0009628 | response to abiotic stimulus | IEP | Predicted GO |
BP | GO:0009987 | cellular process | IEP | Predicted GO |
MF | GO:0015079 | potassium ion transmembrane transporter activity | IEP | Predicted GO |
BP | GO:0016311 | dephosphorylation | IEP | Predicted GO |
MF | GO:0016421 | CoA carboxylase activity | IEP | Predicted GO |
MF | GO:0016775 | phosphotransferase activity, nitrogenous group as acceptor | IEP | Predicted GO |
MF | GO:0016779 | nucleotidyltransferase activity | IEP | Predicted GO |
MF | GO:0016787 | hydrolase activity | IEP | Predicted GO |
MF | GO:0016885 | ligase activity, forming carbon-carbon bonds | IEP | Predicted GO |
MF | GO:0017076 | purine nucleotide binding | IEP | Predicted GO |
BP | GO:0018298 | protein-chromophore linkage | IEP | Predicted GO |
BP | GO:0019682 | glyceraldehyde-3-phosphate metabolic process | IEP | Predicted GO |
MF | GO:0030554 | adenyl nucleotide binding | IEP | Predicted GO |
MF | GO:0030983 | mismatched DNA binding | IEP | Predicted GO |
MF | GO:0032553 | ribonucleotide binding | IEP | Predicted GO |
MF | GO:0032555 | purine ribonucleotide binding | IEP | Predicted GO |
MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Predicted GO |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predicted GO |
MF | GO:0035639 | purine ribonucleoside triphosphate binding | IEP | Predicted GO |
MF | GO:0036094 | small molecule binding | IEP | Predicted GO |
BP | GO:0036260 | RNA capping | IEP | Predicted GO |
BP | GO:0042364 | water-soluble vitamin biosynthetic process | IEP | Predicted GO |
BP | GO:0042726 | flavin-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0042727 | flavin-containing compound biosynthetic process | IEP | Predicted GO |
MF | GO:0043168 | anion binding | IEP | Predicted GO |
BP | GO:0043248 | proteasome assembly | IEP | Predicted GO |
BP | GO:0044237 | cellular metabolic process | IEP | Predicted GO |
BP | GO:0044281 | small molecule metabolic process | IEP | Predicted GO |
BP | GO:0044283 | small molecule biosynthetic process | IEP | Predicted GO |
BP | GO:0046483 | heterocycle metabolic process | IEP | Predicted GO |
BP | GO:0050896 | response to stimulus | IEP | Predicted GO |
BP | GO:0051156 | glucose 6-phosphate metabolic process | IEP | Predicted GO |
BP | GO:0051606 | detection of stimulus | IEP | Predicted GO |
MF | GO:0070568 | guanylyltransferase activity | IEP | Predicted GO |
BP | GO:0071805 | potassium ion transmembrane transport | IEP | Predicted GO |
MF | GO:0097159 | organic cyclic compound binding | IEP | Predicted GO |
MF | GO:0097367 | carbohydrate derivative binding | IEP | Predicted GO |
MF | GO:1901265 | nucleoside phosphate binding | IEP | Predicted GO |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Predicted GO |
MF | GO:1901363 | heterocyclic compound binding | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 599 | 627 |
IPR002885 | Pentatricopeptide_repeat | 259 | 289 |
IPR002885 | Pentatricopeptide_repeat | 433 | 452 |
IPR002885 | Pentatricopeptide_repeat | 533 | 555 |
IPR032867 | DYW_dom | 633 | 754 |
IPR002885 | Pentatricopeptide_repeat | 357 | 404 |
IPR002885 | Pentatricopeptide_repeat | 458 | 506 |
IPR002885 | Pentatricopeptide_repeat | 156 | 201 |
No external refs found! |