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  5. Sopen09g013020

Sopen09g013020


Description : Ribosomal L18p/L5e family


Gene families : OG_42_0001609 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001609_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen09g013020
Cluster HCCA clusters: Cluster_110

Target Alias Description ECC score Gene Family Method Actions
144921 No alias ribosomal protein L5 0.02 Orthogroups_2024-Update
Bradi4g13640 No alias ribosomal protein L5 0.03 Orthogroups_2024-Update
Brara.C04001.1 No alias component *(uL18) of large ribosomal-subunit (LSU) proteome 0.02 Orthogroups_2024-Update
Brara.C04002.1 No alias component *(uL18) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Brara.G00424.1 No alias component *(uL18) of large ribosomal-subunit (LSU) proteome 0.02 Orthogroups_2024-Update
Cre14.g621450 No alias ribosomal protein L5 B 0.02 Orthogroups_2024-Update
Glyma.07G059900 No alias ribosomal protein L5 B 0.05 Orthogroups_2024-Update
Glyma.07G060000 No alias ribosomal protein L5 B 0.03 Orthogroups_2024-Update
Glyma.13G280200 No alias ribosomal protein L5 B 0.04 Orthogroups_2024-Update
LOC_Os01g67134 No alias ribosomal L18p/L5e family protein, putative, expressed 0.03 Orthogroups_2024-Update
Pp1s364_3V6 No alias ribosomal protein 0.02 Orthogroups_2024-Update
Pp1s38_329V6 No alias ribosomal protein 0.03 Orthogroups_2024-Update
Pp1s97_115V6 No alias ribosomal protein 0.02 Orthogroups_2024-Update
Seita.5G413500.1 No alias component *(uL18) of large ribosomal-subunit (LSU) proteome 0.02 Orthogroups_2024-Update
Sobic.003G387900.1 No alias component *(uL18) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Solyc06g082870 No alias 60S ribosomal protein L5-like protein (AHRD V3.3 ***... 0.07 Orthogroups_2024-Update
Solyc09g020130 No alias 60S ribosomal protein L5 (AHRD V3.3 *** RL5_CUCSA) 0.07 Orthogroups_2024-Update
evm.model.contig_3443.5 No alias (q6unt2|rl5_cucsa : 302.0) 60S ribosomal protein L5 -... 0.03 Orthogroups_2024-Update
evm.model.tig00000194.49 No alias (o65353|rl5_helan : 322.0) 60S ribosomal protein L5 -... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005622 intracellular IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
MF GO:0008097 5S rRNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR025607 Rbsml_L5e/L18P_C 191 280
IPR005485 Rbsml_L5_euk/L18_arc 14 174
No external refs found!