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  5. Glyma.06G092900

Glyma.06G092900


Description : Rhamnogalacturonate lyase family protein


Gene families : OG_42_0000589 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000589_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.06G092900
Cluster HCCA clusters: Cluster_161

Target Alias Description ECC score Gene Family Method Actions
At1g09890 No alias Rhamnogalacturonate lyase family protein... 0.04 Orthogroups_2024-Update
At1g09910 No alias Rhamnogalacturonate lyase family protein... 0.02 Orthogroups_2024-Update
Potri.006G253601 No alias Rhamnogalacturonate lyase family protein 0.03 Orthogroups_2024-Update
Solyc04g014430 No alias Rhamnogalacturonate lyase family protein (AHRD V3.3 ***... 0.04 Orthogroups_2024-Update
Solyc04g076650 No alias Rhamnogalacturonate lyase family protein (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
Sopen09g008730 No alias Polysaccharide lyase family 4, domain III 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004180 carboxypeptidase activity IEP Predicted GO
MF GO:0004185 serine-type carboxypeptidase activity IEP Predicted GO
MF GO:0005543 phospholipid binding IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0006952 defense response IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
MF GO:0008238 exopeptidase activity IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
MF GO:0016791 phosphatase activity IEP Predicted GO
BP GO:0034227 tRNA thio-modification IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
MF GO:0061630 ubiquitin protein ligase activity IEP Predicted GO
MF GO:0061659 ubiquitin-like protein ligase activity IEP Predicted GO
MF GO:0070008 serine-type exopeptidase activity IEP Predicted GO
MF GO:0098519 nucleotide phosphatase activity, acting on free nucleotides IEP Predicted GO
InterPro domains Description Start Stop
IPR010325 Rhamnogal_lyase 6 203
IPR029413 RG-lyase_II 357 429
IPR029411 RG-lyase_III 443 631
No external refs found!