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  5. Solyc02g085650

Solyc02g085650


Description : Pentatricopeptide repeat-containing protein (AHRD V3.3 *** D7MBF2_ARALL)


Gene families : OG_42_0001076 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001076_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Solyc02g085650
Cluster HCCA clusters: Cluster_26

Target Alias Description ECC score Gene Family Method Actions
At1g55890 No alias Pentatricopeptide repeat-containing protein At1g55890,... 0.02 Orthogroups_2024-Update
At4g36680 No alias Pentatricopeptide repeat-containing protein At4g36680,... 0.02 Orthogroups_2024-Update
Bradi3g49480 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Brara.A03285.1 No alias component *(mS78/mS79) of small mitoribosomal-subunit proteome 0.03 Orthogroups_2024-Update
GRMZM2G165290 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.007G028400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Orthogroups_2024-Update
Seita.1G238500.1 No alias component *(mL103) of large mitoribosomal-subunit proteome 0.04 Orthogroups_2024-Update
Sobic.004G223800.1 No alias component *(mL103) of large mitoribosomal-subunit... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 106 132
IPR002885 Pentatricopeptide_repeat 138 163
IPR002885 Pentatricopeptide_repeat 174 203
IPR002885 Pentatricopeptide_repeat 208 248
IPR002885 Pentatricopeptide_repeat 275 319
No external refs found!