Glyma.06G184000

Description : cyclic nucleotide-gated channel 16

Gene families : OG_42_0000108 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000108_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Glycine release: Glyma.06G184000
Cluster	HCCA clusters: Cluster_180

Target	Alias	Description	ECC score	Gene Family Method
84488	No alias	cyclic nucleotide-gated cation channel 4	0.03	Orthogroups_2024-Update
At1g19780	No alias	Putative cyclic nucleotide-gated ion channel 8...	0.04	Orthogroups_2024-Update
Bradi2g57697	No alias	cyclic nucleotide-gated channel 18	0.03	Orthogroups_2024-Update
Brara.C03656.1	No alias	cyclic nucleotide-gated cation channel *(CNGC)	0.03	Orthogroups_2024-Update
Brara.E02422.1	No alias	cyclic nucleotide-gated cation channel *(CNGC)	0.03	Orthogroups_2024-Update
GRMZM2G161800	No alias	cyclic nucleotide-binding transporter 1	0.03	Orthogroups_2024-Update
GRMZM5G858887	No alias	Cyclic nucleotide-regulated ion channel family protein	0.04	Orthogroups_2024-Update
Glyma.16G025400	No alias	cyclic nucleotide-gated channel 13	0.01	Orthogroups_2024-Update
Glyma.16G218300	No alias	cyclic nucleotide-binding transporter 1	0.02	Orthogroups_2024-Update
LOC_Os06g33600	No alias	cyclic nucleotide-gated ion channel 1, putative, expressed	0.02	Orthogroups_2024-Update
Potri.002G170000	No alias	cyclic nucleotide gated channel 10	0.03	Orthogroups_2024-Update
Potri.014G097900	No alias	cyclic nucleotide gated channel 1	0.03	Orthogroups_2024-Update
Potri.015G033900	No alias	cyclic nucleotide-binding transporter 1	0.04	Orthogroups_2024-Update
Potri.017G089800	No alias	Cyclic nucleotide-regulated ion channel family protein	0.03	Orthogroups_2024-Update
Potri.017G089900	No alias	Cyclic nucleotide-regulated ion channel family protein	0.03	Orthogroups_2024-Update
Pp1s90_245V6	No alias	cyclic nucleotide-gated ion	0.02	Orthogroups_2024-Update
Solyc09g007840	No alias	Cyclic nucleotide-gated channel (AHRD V3.3 *** A0A0K9PRG4_ZOSMR)	0.02	Orthogroups_2024-Update
Sopen03g035780	No alias	Ion transport protein	0.03	Orthogroups_2024-Update
Sopen05g028790	No alias	Ion transport protein	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005216	ion channel activity	IEA	InterProScan predictions
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006811	ion transport	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
MF	GO:0015075	ion transmembrane transporter activity	None	Extended
MF	GO:0015267	channel activity	None	Extended
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	None	Extended
CC	GO:0016020	membrane	IEA	InterProScan predictions
MF	GO:0022803	passive transmembrane transporter activity	None	Extended
MF	GO:0022838	substrate-specific channel activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	InterProScan predictions

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Type	GO Term	Name	Evidence	Source
MF	GO:0003779	actin binding	IEP	Predicted GO
MF	GO:0004612	phosphoenolpyruvate carboxykinase (ATP) activity	IEP	Predicted GO
CC	GO:0005634	nucleus	IEP	Predicted GO
BP	GO:0006006	glucose metabolic process	IEP	Predicted GO
BP	GO:0006094	gluconeogenesis	IEP	Predicted GO
BP	GO:0006355	regulation of transcription, DNA-templated	IEP	Predicted GO
BP	GO:0006664	glycolipid metabolic process	IEP	Predicted GO
BP	GO:0006820	anion transport	IEP	Predicted GO
MF	GO:0009029	tetraacyldisaccharide 4'-kinase activity	IEP	Predicted GO
BP	GO:0009245	lipid A biosynthetic process	IEP	Predicted GO
BP	GO:0009247	glycolipid biosynthetic process	IEP	Predicted GO
BP	GO:0009889	regulation of biosynthetic process	IEP	Predicted GO
BP	GO:0010468	regulation of gene expression	IEP	Predicted GO
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	Predicted GO
BP	GO:0016051	carbohydrate biosynthetic process	IEP	Predicted GO
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	Predicted GO
BP	GO:0019222	regulation of metabolic process	IEP	Predicted GO
BP	GO:0019319	hexose biosynthetic process	IEP	Predicted GO
MF	GO:0020037	heme binding	IEP	Predicted GO
BP	GO:0031323	regulation of cellular metabolic process	IEP	Predicted GO
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	Predicted GO
BP	GO:0046364	monosaccharide biosynthetic process	IEP	Predicted GO
BP	GO:0046467	membrane lipid biosynthetic process	IEP	Predicted GO
BP	GO:0046493	lipid A metabolic process	IEP	Predicted GO
MF	GO:0046906	tetrapyrrole binding	IEP	Predicted GO
MF	GO:0046983	protein dimerization activity	IEP	Predicted GO
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	Predicted GO
BP	GO:0051252	regulation of RNA metabolic process	IEP	Predicted GO
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	Predicted GO
BP	GO:0080090	regulation of primary metabolic process	IEP	Predicted GO
BP	GO:1901269	lipooligosaccharide metabolic process	IEP	Predicted GO
BP	GO:1901271	lipooligosaccharide biosynthetic process	IEP	Predicted GO
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	Predicted GO
BP	GO:1903509	liposaccharide metabolic process	IEP	Predicted GO
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	Predicted GO
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000595	cNMP-bd_dom	466	554
IPR005821	Ion_trans_dom	44	370

External Links

No external refs found!

Glyma.06G184000

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation