Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Glycine release: Glyma.06G311600 | |
Cluster | HCCA clusters: Cluster_289 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
105356 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
82024 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.01 | Orthogroups_2024-Update | |
85415 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
A4A49_17130 | No alias | pentatricopeptide repeat-containing protein dot4, chloroplastic | 0.03 | Orthogroups_2024-Update | |
A4A49_19306 | No alias | pentatricopeptide repeat-containing protein,... | 0.04 | Orthogroups_2024-Update | |
Bradi1g56040 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Bradi2g06450 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Bradi2g15700 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
Bradi3g51740 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Brara.E03135.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Brara.K00505.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
GRMZM2G019689 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
GRMZM2G022884 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
GRMZM2G171994 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.01G228000 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.02G006900 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
Glyma.03G239200 | No alias | mitochondrial editing factor 19 | 0.03 | Orthogroups_2024-Update | |
Glyma.08G291800 | No alias | pentatricopeptide (PPR) repeat-containing protein | 0.04 | Orthogroups_2024-Update | |
Glyma.09G086600 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.04 | Orthogroups_2024-Update | |
Glyma.12G146900 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
Glyma.16G206000 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
Glyma.17G209700 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Glyma.19G026400 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
HORVU2Hr1G124480.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
LOC_Os07g07620 | No alias | pentatricopeptide, putative, expressed | 0.03 | Orthogroups_2024-Update | |
MA_205762g0010 | No alias | (at4g02750 : 416.0) Tetratricopeptide repeat (TPR)-like... | 0.02 | Orthogroups_2024-Update | |
MA_412g0010 | No alias | (at2g13600 : 442.0) Pentatricopeptide repeat (PPR)... | 0.02 | Orthogroups_2024-Update | |
MA_75133g0010 | No alias | (at1g11290 : 608.0) Pentatricopeptide Repeat Protein... | 0.04 | Orthogroups_2024-Update | |
MA_95261g0010 | No alias | (at1g11290 : 556.0) Pentatricopeptide Repeat Protein... | 0.02 | Orthogroups_2024-Update | |
PSME_00034399-RA | No alias | (at4g33170 : 426.0) Tetratricopeptide repeat (TPR)-like... | 0.02 | Orthogroups_2024-Update | |
PSME_00044871-RA | No alias | (at2g39620 : 426.0) Pentatricopeptide repeat (PPR)... | 0.01 | Orthogroups_2024-Update | |
Potri.002G239600 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
Potri.003G088600 | No alias | Pentatricopeptide repeat (PPR-like) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Potri.004G059400 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.02 | Orthogroups_2024-Update | |
Potri.004G124400 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.04 | Orthogroups_2024-Update | |
Potri.007G050200 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Potri.010G086200 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.04 | Orthogroups_2024-Update | |
Potri.012G048800 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Potri.013G044700 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
Potri.013G058900 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Potri.017G091600 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.05 | Orthogroups_2024-Update | |
Seita.1G237400.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Seita.2G001800.1 | No alias | RNA editing factor *(ELI1) | 0.02 | Orthogroups_2024-Update | |
Seita.2G047600.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Seita.2G091900.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Seita.2G247200.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Seita.2G302700.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Seita.5G176900.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Seita.5G361000.1 | No alias | RNA editing factor *(MEF10) | 0.02 | Orthogroups_2024-Update | |
Seita.5G460300.1 | No alias | RNA editing factor *(OTP72) | 0.04 | Orthogroups_2024-Update | |
Seita.6G213800.1 | No alias | RNA editing factor *(DOT4) | 0.03 | Orthogroups_2024-Update | |
Seita.7G131800.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
Seita.9G015400.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Seita.9G477500.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.001G149100.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Sobic.001G312700.1 | No alias | RNA editing factor *(MEF25) | 0.02 | Orthogroups_2024-Update | |
Sobic.001G509700.2 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.002G111700.6 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.002G240900.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Sobic.002G292300.2 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Sobic.006G122100.2 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
Sobic.009G238700.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Solyc01g006920 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.03 | Orthogroups_2024-Update | |
Solyc01g090510 | No alias | Pentatricopeptide repeat-containing protein, putative... | 0.03 | Orthogroups_2024-Update | |
Solyc05g013200 | No alias | Pentatricopeptide repeat-containing family protein (AHRD... | 0.03 | Orthogroups_2024-Update | |
Solyc07g055310 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.03 | Orthogroups_2024-Update | |
Solyc11g008940 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.04 | Orthogroups_2024-Update | |
Solyc11g011860 | No alias | Pentatricopeptide repeat-containing protein family (AHRD... | 0.04 | Orthogroups_2024-Update | |
Solyc11g071370 | No alias | Pentatricopeptide repeat-containing family protein (AHRD... | 0.04 | Orthogroups_2024-Update | |
Solyc12g042400 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.03 | Orthogroups_2024-Update | |
Sopen01g015270 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
Sopen01g033110 | No alias | PPR repeat | 0.02 | Orthogroups_2024-Update | |
Sopen03g024500 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update | |
Sopen03g029160 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
Sopen03g035770 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
Sopen05g002740 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0000049 | tRNA binding | IEP | Predicted GO |
CC | GO:0000148 | 1,3-beta-D-glucan synthase complex | IEP | Predicted GO |
MF | GO:0000295 | adenine nucleotide transmembrane transporter activity | IEP | Predicted GO |
BP | GO:0003333 | amino acid transmembrane transport | IEP | Predicted GO |
MF | GO:0003843 | 1,3-beta-D-glucan synthase activity | IEP | Predicted GO |
MF | GO:0003860 | 3-hydroxyisobutyryl-CoA hydrolase activity | IEP | Predicted GO |
MF | GO:0003883 | CTP synthase activity | IEP | Predicted GO |
MF | GO:0004018 | N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity | IEP | Predicted GO |
MF | GO:0004175 | endopeptidase activity | IEP | Predicted GO |
MF | GO:0004197 | cysteine-type endopeptidase activity | IEP | Predicted GO |
MF | GO:0004371 | glycerone kinase activity | IEP | Predicted GO |
MF | GO:0004474 | malate synthase activity | IEP | Predicted GO |
MF | GO:0005346 | purine ribonucleotide transmembrane transporter activity | IEP | Predicted GO |
MF | GO:0005347 | ATP transmembrane transporter activity | IEP | Predicted GO |
MF | GO:0005471 | ATP:ADP antiporter activity | IEP | Predicted GO |
BP | GO:0006066 | alcohol metabolic process | IEP | Predicted GO |
BP | GO:0006071 | glycerol metabolic process | IEP | Predicted GO |
BP | GO:0006074 | (1->3)-beta-D-glucan metabolic process | IEP | Predicted GO |
BP | GO:0006075 | (1->3)-beta-D-glucan biosynthetic process | IEP | Predicted GO |
BP | GO:0006081 | cellular aldehyde metabolic process | IEP | Predicted GO |
BP | GO:0006097 | glyoxylate cycle | IEP | Predicted GO |
BP | GO:0006163 | purine nucleotide metabolic process | IEP | Predicted GO |
BP | GO:0006164 | purine nucleotide biosynthetic process | IEP | Predicted GO |
BP | GO:0006188 | IMP biosynthetic process | IEP | Predicted GO |
BP | GO:0006220 | pyrimidine nucleotide metabolic process | IEP | Predicted GO |
BP | GO:0006221 | pyrimidine nucleotide biosynthetic process | IEP | Predicted GO |
BP | GO:0006511 | ubiquitin-dependent protein catabolic process | IEP | Predicted GO |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Predicted GO |
BP | GO:0006753 | nucleoside phosphate metabolic process | IEP | Predicted GO |
BP | GO:0006766 | vitamin metabolic process | IEP | Predicted GO |
BP | GO:0006767 | water-soluble vitamin metabolic process | IEP | Predicted GO |
BP | GO:0006772 | thiamine metabolic process | IEP | Predicted GO |
BP | GO:0006793 | phosphorus metabolic process | IEP | Predicted GO |
BP | GO:0006796 | phosphate-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | Predicted GO |
BP | GO:0006862 | nucleotide transport | IEP | Predicted GO |
BP | GO:0006865 | amino acid transport | IEP | Predicted GO |
MF | GO:0008514 | organic anion transmembrane transporter activity | IEP | Predicted GO |
BP | GO:0009057 | macromolecule catabolic process | IEP | Predicted GO |
BP | GO:0009058 | biosynthetic process | IEP | Predicted GO |
BP | GO:0009110 | vitamin biosynthetic process | IEP | Predicted GO |
BP | GO:0009117 | nucleotide metabolic process | IEP | Predicted GO |
BP | GO:0009123 | nucleoside monophosphate metabolic process | IEP | Predicted GO |
BP | GO:0009124 | nucleoside monophosphate biosynthetic process | IEP | Predicted GO |
BP | GO:0009126 | purine nucleoside monophosphate metabolic process | IEP | Predicted GO |
BP | GO:0009127 | purine nucleoside monophosphate biosynthetic process | IEP | Predicted GO |
BP | GO:0009150 | purine ribonucleotide metabolic process | IEP | Predicted GO |
BP | GO:0009152 | purine ribonucleotide biosynthetic process | IEP | Predicted GO |
BP | GO:0009156 | ribonucleoside monophosphate biosynthetic process | IEP | Predicted GO |
BP | GO:0009161 | ribonucleoside monophosphate metabolic process | IEP | Predicted GO |
BP | GO:0009165 | nucleotide biosynthetic process | IEP | Predicted GO |
BP | GO:0009167 | purine ribonucleoside monophosphate metabolic process | IEP | Predicted GO |
BP | GO:0009168 | purine ribonucleoside monophosphate biosynthetic process | IEP | Predicted GO |
BP | GO:0009228 | thiamine biosynthetic process | IEP | Predicted GO |
BP | GO:0009259 | ribonucleotide metabolic process | IEP | Predicted GO |
BP | GO:0009260 | ribonucleotide biosynthetic process | IEP | Predicted GO |
MF | GO:0009982 | pseudouridine synthase activity | IEP | Predicted GO |
BP | GO:0009987 | cellular process | IEP | Predicted GO |
MF | GO:0015215 | nucleotide transmembrane transporter activity | IEP | Predicted GO |
MF | GO:0015216 | purine nucleotide transmembrane transporter activity | IEP | Predicted GO |
MF | GO:0015217 | ADP transmembrane transporter activity | IEP | Predicted GO |
MF | GO:0015301 | anion:anion antiporter activity | IEP | Predicted GO |
MF | GO:0015605 | organophosphate ester transmembrane transporter activity | IEP | Predicted GO |
BP | GO:0015748 | organophosphate ester transport | IEP | Predicted GO |
MF | GO:0015932 | nucleobase-containing compound transmembrane transporter activity | IEP | Predicted GO |
MF | GO:0016289 | CoA hydrolase activity | IEP | Predicted GO |
MF | GO:0016790 | thiolester hydrolase activity | IEP | Predicted GO |
MF | GO:0016840 | carbon-nitrogen lyase activity | IEP | Predicted GO |
MF | GO:0016842 | amidine-lyase activity | IEP | Predicted GO |
MF | GO:0016874 | ligase activity | IEP | Predicted GO |
BP | GO:0018130 | heterocycle biosynthetic process | IEP | Predicted GO |
BP | GO:0019400 | alditol metabolic process | IEP | Predicted GO |
BP | GO:0019438 | aromatic compound biosynthetic process | IEP | Predicted GO |
BP | GO:0019637 | organophosphate metabolic process | IEP | Predicted GO |
BP | GO:0019693 | ribose phosphate metabolic process | IEP | Predicted GO |
BP | GO:0019751 | polyol metabolic process | IEP | Predicted GO |
CC | GO:0019773 | proteasome core complex, alpha-subunit complex | IEP | Predicted GO |
BP | GO:0019941 | modification-dependent protein catabolic process | IEP | Predicted GO |
MF | GO:0031625 | ubiquitin protein ligase binding | IEP | Predicted GO |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predicted GO |
BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | Predicted GO |
MF | GO:0035091 | phosphatidylinositol binding | IEP | Predicted GO |
BP | GO:0042364 | water-soluble vitamin biosynthetic process | IEP | Predicted GO |
BP | GO:0042723 | thiamine-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0042724 | thiamine-containing compound biosynthetic process | IEP | Predicted GO |
BP | GO:0043632 | modification-dependent macromolecule catabolic process | IEP | Predicted GO |
BP | GO:0044237 | cellular metabolic process | IEP | Predicted GO |
BP | GO:0044238 | primary metabolic process | IEP | Predicted GO |
BP | GO:0044249 | cellular biosynthetic process | IEP | Predicted GO |
BP | GO:0044262 | cellular carbohydrate metabolic process | IEP | Predicted GO |
BP | GO:0044265 | cellular macromolecule catabolic process | IEP | Predicted GO |
BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Predicted GO |
BP | GO:0044281 | small molecule metabolic process | IEP | Predicted GO |
MF | GO:0044389 | ubiquitin-like protein ligase binding | IEP | Predicted GO |
BP | GO:0046040 | IMP metabolic process | IEP | Predicted GO |
BP | GO:0046390 | ribose phosphate biosynthetic process | IEP | Predicted GO |
BP | GO:0046483 | heterocycle metabolic process | IEP | Predicted GO |
BP | GO:0046487 | glyoxylate metabolic process | IEP | Predicted GO |
BP | GO:0051603 | proteolysis involved in cellular protein catabolic process | IEP | Predicted GO |
BP | GO:0055086 | nucleobase-containing small molecule metabolic process | IEP | Predicted GO |
BP | GO:0071704 | organic substance metabolic process | IEP | Predicted GO |
BP | GO:0072521 | purine-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0072522 | purine-containing compound biosynthetic process | IEP | Predicted GO |
BP | GO:0072527 | pyrimidine-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0072528 | pyrimidine-containing compound biosynthetic process | IEP | Predicted GO |
BP | GO:0090407 | organophosphate biosynthetic process | IEP | Predicted GO |
BP | GO:0098656 | anion transmembrane transport | IEP | Predicted GO |
MF | GO:0099516 | ion antiporter activity | IEP | Predicted GO |
BP | GO:1901137 | carbohydrate derivative biosynthetic process | IEP | Predicted GO |
BP | GO:1901293 | nucleoside phosphate biosynthetic process | IEP | Predicted GO |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Predicted GO |
BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | Predicted GO |
MF | GO:1901505 | carbohydrate derivative transmembrane transporter activity | IEP | Predicted GO |
BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Predicted GO |
BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Predicted GO |
BP | GO:1901576 | organic substance biosynthetic process | IEP | Predicted GO |
BP | GO:1901615 | organic hydroxy compound metabolic process | IEP | Predicted GO |
BP | GO:1903825 | organic acid transmembrane transport | IEP | Predicted GO |
BP | GO:1905039 | carboxylic acid transmembrane transport | IEP | Predicted GO |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 584 | 609 |
IPR002885 | Pentatricopeptide_repeat | 209 | 238 |
IPR002885 | Pentatricopeptide_repeat | 108 | 136 |
IPR002885 | Pentatricopeptide_repeat | 382 | 406 |
IPR002885 | Pentatricopeptide_repeat | 180 | 207 |
IPR002885 | Pentatricopeptide_repeat | 482 | 510 |
IPR032867 | DYW_dom | 683 | 806 |
IPR002885 | Pentatricopeptide_repeat | 307 | 355 |
IPR002885 | Pentatricopeptide_repeat | 511 | 557 |
IPR002885 | Pentatricopeptide_repeat | 408 | 456 |
No external refs found! |