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  5. Glyma.09G201300

Glyma.09G201300


Description : Rhamnogalacturonate lyase family protein


Gene families : OG_42_0000589 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000589_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.09G201300
Cluster HCCA clusters: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
At4g37950 No alias Rhamnogalacturonate lyase family protein... 0.05 Orthogroups_2024-Update
HORVU4Hr1G026250.3 No alias Unknown function 0.02 Orthogroups_2024-Update
Potri.006G253601 No alias Rhamnogalacturonate lyase family protein 0.03 Orthogroups_2024-Update
Pp1s60_134V6 No alias F21M12.30; expressed protein [Arabidopsis thaliana] 0.02 Orthogroups_2024-Update
Solyc11g011280 No alias Rhamnogalacturonate lyase family protein (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
CC GO:0005787 signal peptidase complex IEP Predicted GO
BP GO:0006465 signal peptide processing IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
BP GO:0016485 protein processing IEP Predicted GO
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Predicted GO
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP Predicted GO
MF GO:0050660 flavin adenine dinucleotide binding IEP Predicted GO
BP GO:0051604 protein maturation IEP Predicted GO
CC GO:0097525 spliceosomal snRNP complex IEP Predicted GO
CC GO:0097526 spliceosomal tri-snRNP complex IEP Predicted GO
CC GO:0120114 Sm-like protein family complex IEP Predicted GO
CC GO:1905368 peptidase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR029413 RG-lyase_II 384 456
IPR010325 Rhamnogal_lyase 36 230
IPR029411 RG-lyase_III 470 659
No external refs found!