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  5. Glyma.10G090000

Glyma.10G090000


Description : topoisomerase II


Gene families : OG_42_0003889 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003889_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.10G090000
Cluster HCCA clusters: Cluster_69

Target Alias Description ECC score Gene Family Method Actions
127267 No alias topoisomerase II 0.03 Orthogroups_2024-Update
98330 No alias topoisomerase II 0.05 Orthogroups_2024-Update
A4A49_12016 No alias dna topoisomerase 2 0.06 Orthogroups_2024-Update
At3g23890 No alias DNA topoisomerase 2 [Source:UniProtKB/Swiss-Prot;Acc:P30182] 0.14 Orthogroups_2024-Update
Brara.A00830.1 No alias DNA topoisomerase *(TOP2) 0.12 Orthogroups_2024-Update
Cre01.g009250 No alias topoisomerase II 0.04 Orthogroups_2024-Update
Kfl00053_0310 kfl00053_0310_v1.1 (o24308|top2_pea : 1259.0) DNA topoisomerase 2 (EC... 0.11 Orthogroups_2024-Update
MA_133272g0010 No alias (at3g23890 : 1518.0) Encodes a topoisomerase II that is... 0.1 Orthogroups_2024-Update
MA_6634g0010 No alias (o24308|top2_pea : 1595.0) DNA topoisomerase 2 (EC... 0.11 Orthogroups_2024-Update
Mp3g13420.1 No alias DNA topoisomerase (TOP2) 0.07 Orthogroups_2024-Update
PSME_00008874-RA No alias (at3g23890 : 1554.0) Encodes a topoisomerase II that is... 0.03 Orthogroups_2024-Update
PSME_00016559-RA No alias (o24308|top2_pea : 1626.0) DNA topoisomerase 2 (EC... 0.04 Orthogroups_2024-Update
Pp1s33_203V6 No alias dna topoisomerase ii 0.03 Orthogroups_2024-Update
Solyc01g087500 No alias DNA topoisomerase 2 (AHRD V3.3 *** K4AYE0_SOLLC) 0.11 Orthogroups_2024-Update
evm.model.contig_3477.2 No alias (at3g23890 : 1176.0) Encodes a topoisomerase II that is... 0.08 Orthogroups_2024-Update
evm.model.tig00021432.55 No alias (o24308|top2_pea : 775.0) DNA topoisomerase 2 (EC... 0.06 Orthogroups_2024-Update
evm.model.tig00021433.1 No alias (at3g23890 : 211.0) Encodes a topoisomerase II that is... 0.06 Orthogroups_2024-Update
evm.model.tig00021433.2 No alias (at3g23890 : 475.0) Encodes a topoisomerase II that is... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
BP GO:0006265 DNA topological change IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000775 chromosome, centromeric region IEP Predicted GO
CC GO:0000776 kinetochore IEP Predicted GO
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0003774 motor activity IEP Predicted GO
MF GO:0003777 microtubule motor activity IEP Predicted GO
MF GO:0005507 copper ion binding IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006928 movement of cell or subcellular component IEP Predicted GO
BP GO:0007017 microtubule-based process IEP Predicted GO
BP GO:0007018 microtubule-based movement IEP Predicted GO
BP GO:0007059 chromosome segregation IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0008131 primary amine oxidase activity IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008483 transaminase activity IEP Predicted GO
BP GO:0009308 amine metabolic process IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Predicted GO
MF GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Predicted GO
CC GO:0031262 Ndc80 complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0045132 meiotic chromosome segregation IEP Predicted GO
MF GO:0048038 quinone binding IEP Predicted GO
CC GO:0098687 chromosomal region IEP Predicted GO
BP GO:0098813 nuclear chromosome segregation IEP Predicted GO
BP GO:1903046 meiotic cell cycle process IEP Predicted GO
InterPro domains Description Start Stop
IPR003594 HATPase_C 75 221
IPR002205 Topo_IIA_A/C 697 1156
IPR013506 Topo_IIA_bsu_dom2 267 418
IPR031660 TOPRIM_C 567 694
IPR006171 TOPRIM_domain 453 556
No external refs found!