Description : Homeotic gene regulator
Gene families : OG_42_0000148 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000148_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Glycine release: Glyma.10G250500 | |
Cluster | HCCA clusters: Cluster_189 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
177985 | No alias | chromatin remodeling factor CHD3 (PICKLE) | 0.02 | Orthogroups_2024-Update | |
440815 | No alias | chromatin remodeling 5 | 0.02 | Orthogroups_2024-Update | |
At2g13370 | No alias | Protein CHROMATIN REMODELING 5... | 0.04 | Orthogroups_2024-Update | |
At5g19310 | No alias | Probable ATP-dependent DNA helicase CHR23... | 0.03 | Orthogroups_2024-Update | |
At5g66750 | No alias | ATP-dependent DNA helicase DDM1... | 0.03 | Orthogroups_2024-Update | |
Bradi1g18910 | No alias | chromatin remodeling 5 | 0.05 | Orthogroups_2024-Update | |
Bradi1g26940 | No alias | chromatin remodeling 4 | 0.05 | Orthogroups_2024-Update | |
Bradi1g47367 | No alias | chromatin remodeling factor CHD3 (PICKLE) | 0.03 | Orthogroups_2024-Update | |
Bradi2g35740 | No alias | chromatin-remodeling protein 11 | 0.03 | Orthogroups_2024-Update | |
Cre07.g325700 | No alias | transcription regulatory protein SNF2, putative | 0.02 | Orthogroups_2024-Update | |
GRMZM2G010085 | No alias | chromatin remodeling factor17 | 0.03 | Orthogroups_2024-Update | |
GRMZM2G010342 | No alias | chromatin remodeling 5 | 0.03 | Orthogroups_2024-Update | |
GRMZM2G097289 | No alias | Homeotic gene regulator | 0.03 | Orthogroups_2024-Update | |
GRMZM2G316191 | No alias | chromatin remodeling 4 | 0.04 | Orthogroups_2024-Update | |
Glyma.08G086100 | No alias | chromatin remodeling 4 | 0.04 | Orthogroups_2024-Update | |
Glyma.14G033600 | No alias | chromatin remodeling 5 | 0.03 | Orthogroups_2024-Update | |
Kfl00010_0280 | kfl00010_0280_v1.1 | (at3g06010 : 961.0) Encodes AtCHR12, a SNF2/Brahma-type... | 0.02 | Orthogroups_2024-Update | |
Kfl00055_0090 | kfl00055_0090_v1.... | (q7g8y3|isw2_orysa : 1337.0) Probable chromatin... | 0.02 | Orthogroups_2024-Update | |
Kfl00590_0040 | kfl00590_0040_v1.1 | (at2g28290 : 922.0) Encodes a SWI2/SNF2-like protein in... | 0.03 | Orthogroups_2024-Update | |
Mp3g15030.1 | No alias | chromatin remodeling factor (Iswi) | 0.05 | Orthogroups_2024-Update | |
Mp5g06580.2 | No alias | chromatin remodeling factor (Snf2) | 0.02 | Orthogroups_2024-Update | |
Mp5g24460.1 | No alias | chromatin remodeling factor (Chd3/Mi-2) | 0.03 | Orthogroups_2024-Update | |
PSME_00001593-RA | No alias | (at2g13370 : 1311.0) chromatin remodeling 5 (CHR5);... | 0.03 | Orthogroups_2024-Update | |
Potri.003G110100 | No alias | chromatin remodeling 4 | 0.03 | Orthogroups_2024-Update | |
Pp1s166_101V6 | No alias | chromodomain helicase dna binding protein 6 | 0.02 | Orthogroups_2024-Update | |
Seita.2G320900.1 | No alias | CHD3-type chromatin remodeling factor *(PKL/PKR) | 0.1 | Orthogroups_2024-Update | |
Seita.2G419600.1 | No alias | component *(CHR5) of SAGA transcription co-activator... | 0.02 | Orthogroups_2024-Update | |
Seita.4G050000.1 | No alias | CHD3-type chromatin remodeling factor *(PKL/PKR) | 0.03 | Orthogroups_2024-Update | |
Seita.4G112400.1 | No alias | SMARCA component *(SYD/BRM/MINU) | 0.03 | Orthogroups_2024-Update | |
Seita.5G166800.1 | No alias | ATPase component *(CHR11/CHR17) of ISWI chromatin... | 0.04 | Orthogroups_2024-Update | |
Sobic.002G308700.1 | No alias | CHD3-type chromatin remodeling factor *(PKL/PKR) | 0.03 | Orthogroups_2024-Update | |
Solyc01g090650 | No alias | No description available | 0.03 | Orthogroups_2024-Update | |
evm.model.tig00000350.9 | No alias | (at2g25170 : 212.0) Encodes a SWI/SWF nuclear-localized... | 0.02 | Orthogroups_2024-Update | |
evm.model.tig00000983.26 | No alias | (at2g13370 : 651.0) chromatin remodeling 5 (CHR5);... | 0.02 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0005524 | ATP binding | IEA | InterProScan predictions |
MF | GO:0042393 | histone binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0004470 | malic enzyme activity | IEP | Predicted GO |
MF | GO:0004471 | malate dehydrogenase (decarboxylating) (NAD+) activity | IEP | Predicted GO |
MF | GO:0004843 | thiol-dependent ubiquitin-specific protease activity | IEP | Predicted GO |
BP | GO:0006357 | regulation of transcription by RNA polymerase II | IEP | Predicted GO |
BP | GO:0006367 | transcription initiation from RNA polymerase II promoter | IEP | Predicted GO |
BP | GO:0006886 | intracellular protein transport | IEP | Predicted GO |
BP | GO:0006904 | vesicle docking involved in exocytosis | IEP | Predicted GO |
BP | GO:0008104 | protein localization | IEP | Predicted GO |
MF | GO:0008641 | ubiquitin-like modifier activating enzyme activity | IEP | Predicted GO |
BP | GO:0009314 | response to radiation | IEP | Predicted GO |
BP | GO:0009411 | response to UV | IEP | Predicted GO |
BP | GO:0009416 | response to light stimulus | IEP | Predicted GO |
BP | GO:0009628 | response to abiotic stimulus | IEP | Predicted GO |
BP | GO:0009891 | positive regulation of biosynthetic process | IEP | Predicted GO |
BP | GO:0009892 | negative regulation of metabolic process | IEP | Predicted GO |
BP | GO:0009893 | positive regulation of metabolic process | IEP | Predicted GO |
BP | GO:0010557 | positive regulation of macromolecule biosynthetic process | IEP | Predicted GO |
BP | GO:0010604 | positive regulation of macromolecule metabolic process | IEP | Predicted GO |
BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | Predicted GO |
BP | GO:0010628 | positive regulation of gene expression | IEP | Predicted GO |
BP | GO:0010629 | negative regulation of gene expression | IEP | Predicted GO |
BP | GO:0015031 | protein transport | IEP | Predicted GO |
BP | GO:0015833 | peptide transport | IEP | Predicted GO |
BP | GO:0016458 | gene silencing | IEP | Predicted GO |
MF | GO:0016615 | malate dehydrogenase activity | IEP | Predicted GO |
MF | GO:0016877 | ligase activity, forming carbon-sulfur bonds | IEP | Predicted GO |
BP | GO:0022406 | membrane docking | IEP | Predicted GO |
CC | GO:0030119 | AP-type membrane coat adaptor complex | IEP | Predicted GO |
CC | GO:0030131 | clathrin adaptor complex | IEP | Predicted GO |
BP | GO:0031047 | gene silencing by RNA | IEP | Predicted GO |
BP | GO:0031325 | positive regulation of cellular metabolic process | IEP | Predicted GO |
BP | GO:0031328 | positive regulation of cellular biosynthetic process | IEP | Predicted GO |
BP | GO:0032784 | regulation of DNA-templated transcription, elongation | IEP | Predicted GO |
BP | GO:0032786 | positive regulation of DNA-templated transcription, elongation | IEP | Predicted GO |
MF | GO:0032947 | protein-containing complex scaffold activity | IEP | Predicted GO |
BP | GO:0032968 | positive regulation of transcription elongation from RNA polymerase II promoter | IEP | Predicted GO |
BP | GO:0033036 | macromolecule localization | IEP | Predicted GO |
BP | GO:0034243 | regulation of transcription elongation from RNA polymerase II promoter | IEP | Predicted GO |
BP | GO:0042886 | amide transport | IEP | Predicted GO |
BP | GO:0043248 | proteasome assembly | IEP | Predicted GO |
BP | GO:0045184 | establishment of protein localization | IEP | Predicted GO |
BP | GO:0045893 | positive regulation of transcription, DNA-templated | IEP | Predicted GO |
BP | GO:0045935 | positive regulation of nucleobase-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0045944 | positive regulation of transcription by RNA polymerase II | IEP | Predicted GO |
BP | GO:0046907 | intracellular transport | IEP | Predicted GO |
BP | GO:0048278 | vesicle docking | IEP | Predicted GO |
BP | GO:0048518 | positive regulation of biological process | IEP | Predicted GO |
BP | GO:0048522 | positive regulation of cellular process | IEP | Predicted GO |
BP | GO:0051173 | positive regulation of nitrogen compound metabolic process | IEP | Predicted GO |
BP | GO:0051254 | positive regulation of RNA metabolic process | IEP | Predicted GO |
BP | GO:0051640 | organelle localization | IEP | Predicted GO |
BP | GO:0051641 | cellular localization | IEP | Predicted GO |
BP | GO:0051649 | establishment of localization in cell | IEP | Predicted GO |
BP | GO:0140029 | exocytic process | IEP | Predicted GO |
BP | GO:0140056 | organelle localization by membrane tethering | IEP | Predicted GO |
BP | GO:1902680 | positive regulation of RNA biosynthetic process | IEP | Predicted GO |
BP | GO:1903508 | positive regulation of nucleic acid-templated transcription | IEP | Predicted GO |
No external refs found! |