Sopen09g033450

Description : RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Gene families : OG_42_0000197 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000197_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen09g033450
Cluster	HCCA clusters: Cluster_25

Target	Alias	Description	ECC score	Gene Family Method
LOC_Os02g12850	No alias	RNA recognition motif containing protein, expressed	0.04	Orthogroups_2024-Update
MA_68291g0010	No alias	(at3g13224 : 261.0) RNA-binding (RRM/RBD/RNP motifs)...	0.03	Orthogroups_2024-Update
PSME_00045509-RA	No alias	(at3g07810 : 234.0) RNA-binding (RRM/RBD/RNP motifs)...	0.02	Orthogroups_2024-Update
Potri.008G170400	No alias	RNA-binding (RRM/RBD/RNP motifs) family protein	0.02	Orthogroups_2024-Update
Pp1s13_162V6	No alias	hnrnp-like protein	0.03	Orthogroups_2024-Update
Solyc07g048030	No alias	RNA-binding protein, putative (AHRD V3.3 *** Q1ENZ5_MUSAC)	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	8	75
IPR000504	RRM_dom	111	178

External Links

No external refs found!