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  5. Glyma.11G039400

Glyma.11G039400


Description : chloroplast beta-amylase


Gene families : OG_42_0000277 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000277_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.11G039400
Cluster HCCA clusters: Cluster_177

Target Alias Description ECC score Gene Family Method Actions
A4A49_09217 No alias beta-amylase 3, chloroplastic 0.04 Orthogroups_2024-Update
Bradi1g25447 No alias beta-amylase 5 0.04 Orthogroups_2024-Update
Bradi1g75610 No alias beta-amylase 1 0.02 Orthogroups_2024-Update
Bradi3g33730 No alias chloroplast beta-amylase 0.04 Orthogroups_2024-Update
Brara.C00838.1 No alias beta amylase & EC_3.2 glycosylase 0.04 Orthogroups_2024-Update
HORVU4Hr1G000520.1 No alias beta amylase & EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
HORVU4Hr1G084390.1 No alias EC_3.2 glycosylase & beta amylase 0.03 Orthogroups_2024-Update
Kfl00337_0020 kfl00337_0020_v1.1 (o22585|amyb_medsa : 538.0) Beta-amylase (EC 3.2.1.2)... 0.02 Orthogroups_2024-Update
MA_124514g0010 No alias (at3g23920 : 732.0) Encodes a chloroplast beta-amylase.... 0.04 Orthogroups_2024-Update
PSME_00015609-RA No alias (at4g17090 : 667.0) Encodes a beta-amylase targeted to... 0.02 Orthogroups_2024-Update
PSME_00017705-RA No alias (at4g17090 : 655.0) Encodes a beta-amylase targeted to... 0.04 Orthogroups_2024-Update
PSME_00048762-RA No alias (at3g23920 : 741.0) Encodes a chloroplast beta-amylase.... 0.05 Orthogroups_2024-Update
Sobic.001G508800.1 No alias EC_3.2 glycosylase & beta amylase 0.03 Orthogroups_2024-Update
Sobic.002G329400.1 No alias EC_3.2 glycosylase & beta amylase 0.03 Orthogroups_2024-Update
Sopen09g034010 No alias Glycosyl hydrolase family 14 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEA InterProScan predictions
MF GO:0016161 beta-amylase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0000062 fatty-acyl-CoA binding IEP Predicted GO
MF GO:0000155 phosphorelay sensor kinase activity IEP Predicted GO
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0004673 protein histidine kinase activity IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
MF GO:0033218 amide binding IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
MF GO:1901567 fatty acid derivative binding IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001554 Glyco_hydro_14 97 510
No external refs found!