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  5. Glyma.13G243600

Glyma.13G243600


Description : SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related


Gene families : OG_42_0001683 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001683_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.13G243600
Cluster HCCA clusters: Cluster_189

Target Alias Description ECC score Gene Family Method Actions
Bradi2g51727 No alias SNF2 domain-containing protein / helicase... 0.03 Orthogroups_2024-Update
Bradi3g15380 No alias SNF2 domain-containing protein / helicase... 0.03 Orthogroups_2024-Update
Glyma.13G183900 No alias SNF2 domain-containing protein / helicase... 0.04 Orthogroups_2024-Update
LOC_Os01g57110 No alias SNF2 family N-terminal domain containing protein, expressed 0.03 Orthogroups_2024-Update
Solyc03g006570 No alias SNF2 domain-containing protein / helicase... 0.02 Orthogroups_2024-Update
evm.model.tig00021014.10 No alias (at5g22750 : 175.0) DNA repair gene. gamma-radiation... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
MF GO:0046872 metal ion binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003779 actin binding IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003917 DNA topoisomerase type I activity IEP Predicted GO
MF GO:0003989 acetyl-CoA carboxylase activity IEP Predicted GO
MF GO:0004525 ribonuclease III activity IEP Predicted GO
MF GO:0005507 copper ion binding IEP Predicted GO
MF GO:0005543 phospholipid binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0005985 sucrose metabolic process IEP Predicted GO
BP GO:0006099 tricarboxylic acid cycle IEP Predicted GO
BP GO:0006101 citrate metabolic process IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0006996 organelle organization IEP Predicted GO
BP GO:0007010 cytoskeleton organization IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0008289 lipid binding IEP Predicted GO
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP Predicted GO
BP GO:0015977 carbon fixation IEP Predicted GO
BP GO:0016042 lipid catabolic process IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
MF GO:0016157 sucrose synthase activity IEP Predicted GO
MF GO:0016421 CoA carboxylase activity IEP Predicted GO
BP GO:0016458 gene silencing IEP Predicted GO
MF GO:0016885 ligase activity, forming carbon-carbon bonds IEP Predicted GO
BP GO:0016999 antibiotic metabolic process IEP Predicted GO
BP GO:0031047 gene silencing by RNA IEP Predicted GO
BP GO:0031123 RNA 3'-end processing IEP Predicted GO
BP GO:0031124 mRNA 3'-end processing IEP Predicted GO
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Predicted GO
MF GO:0035091 phosphatidylinositol binding IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
InterPro domains Description Start Stop
IPR018957 Znf_C3HC4_RING-type 1004 1040
IPR001650 Helicase_C 1162 1261
IPR000330 SNF2_N 588 965
No external refs found!