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  5. Glyma.15G253800

Glyma.15G253800


Description : U5 small nuclear ribonucleoprotein helicase, putative


Gene families : OG_42_0000868 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000868_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.15G253800
Cluster HCCA clusters: Cluster_443

Target Alias Description ECC score Gene Family Method Actions
410613 No alias U5 small nuclear ribonucleoprotein helicase 0.01 Orthogroups_2024-Update
At1g20960 No alias DExH-box ATP-dependent RNA helicase DExH12... 0.06 Orthogroups_2024-Update
Bradi1g70057 No alias U5 small nuclear ribonucleoprotein helicase 0.08 Orthogroups_2024-Update
Bradi3g00980 No alias U5 small nuclear ribonucleoprotein helicase, putative 0.03 Orthogroups_2024-Update
Cre17.g744147 No alias U5 small nuclear ribonucleoprotein helicase, putative 0.02 Orthogroups_2024-Update
HORVU6Hr1G004350.3 No alias RNA helicase *(Brr2) 0.03 Orthogroups_2024-Update
Kfl00102_0100 kfl00102_0100_v1.1 (at1g20960 : 2806.0) embryo defective 1507 (emb1507);... 0.06 Orthogroups_2024-Update
LOC_Os03g11470 No alias DEAD/DEAH box helicase domain containing protein, expressed 0.02 Orthogroups_2024-Update
PSME_00000757-RA No alias (at5g61140 : 756.0) Encodes a predicted protein with 30%... 0.04 Orthogroups_2024-Update
PSME_00051380-RA No alias (at1g20960 : 1382.0) embryo defective 1507 (emb1507);... 0.03 Orthogroups_2024-Update
Potri.015G056501 No alias U5 small nuclear ribonucleoprotein helicase 0.04 Orthogroups_2024-Update
Pp1s28_172V6 No alias No description available 0.02 Orthogroups_2024-Update
Seita.1G005500.1 No alias RNA helicase *(Brr2) 0.07 Orthogroups_2024-Update
Seita.9G492000.1 No alias RNA helicase *(Brr2) 0.02 Orthogroups_2024-Update
Sobic.001G457800.2 No alias RNA helicase *(Brr2) 0.02 Orthogroups_2024-Update
evm.model.contig_564.1 No alias (at1g20960 : 540.0) embryo defective 1507 (emb1507);... 0.02 Orthogroups_2024-Update
evm.model.tig00000865.27 No alias (at1g20960 : 291.0) embryo defective 1507 (emb1507);... 0.02 Orthogroups_2024-Update
evm.model.tig00000865.28 No alias (at1g20960 : 1091.0) embryo defective 1507 (emb1507);... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan predictions
MF GO:0005524 ATP binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay IEP Predicted GO
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
CC GO:0000428 DNA-directed RNA polymerase complex IEP Predicted GO
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP Predicted GO
MF GO:0003774 motor activity IEP Predicted GO
MF GO:0003777 microtubule motor activity IEP Predicted GO
MF GO:0003887 DNA-directed DNA polymerase activity IEP Predicted GO
MF GO:0004820 glycine-tRNA ligase activity IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
MF GO:0005244 voltage-gated ion channel activity IEP Predicted GO
MF GO:0005247 voltage-gated chloride channel activity IEP Predicted GO
MF GO:0005253 anion channel activity IEP Predicted GO
MF GO:0005254 chloride channel activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005665 RNA polymerase II, core complex IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006366 transcription by RNA polymerase II IEP Predicted GO
BP GO:0006401 RNA catabolic process IEP Predicted GO
BP GO:0006402 mRNA catabolic process IEP Predicted GO
BP GO:0006426 glycyl-tRNA aminoacylation IEP Predicted GO
BP GO:0006821 chloride transport IEP Predicted GO
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Predicted GO
BP GO:0006928 movement of cell or subcellular component IEP Predicted GO
BP GO:0007017 microtubule-based process IEP Predicted GO
BP GO:0007018 microtubule-based movement IEP Predicted GO
MF GO:0008017 microtubule binding IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0008308 voltage-gated anion channel activity IEP Predicted GO
MF GO:0008408 3'-5' exonuclease activity IEP Predicted GO
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Predicted GO
BP GO:0009314 response to radiation IEP Predicted GO
BP GO:0009411 response to UV IEP Predicted GO
BP GO:0009416 response to light stimulus IEP Predicted GO
BP GO:0009628 response to abiotic stimulus IEP Predicted GO
MF GO:0015108 chloride transmembrane transporter activity IEP Predicted GO
MF GO:0015291 secondary active transmembrane transporter activity IEP Predicted GO
MF GO:0015297 antiporter activity IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Predicted GO
MF GO:0016881 acid-amino acid ligase activity IEP Predicted GO
MF GO:0017069 snRNA binding IEP Predicted GO
MF GO:0017070 U6 snRNA binding IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
MF GO:0022832 voltage-gated channel activity IEP Predicted GO
CC GO:0030118 clathrin coat IEP Predicted GO
CC GO:0030125 clathrin vesicle coat IEP Predicted GO
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Predicted GO
CC GO:0030132 clathrin coat of coated pit IEP Predicted GO
MF GO:0030623 U5 snRNA binding IEP Predicted GO
CC GO:0030880 RNA polymerase complex IEP Predicted GO
MF GO:0034061 DNA polymerase activity IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
CC GO:0044428 nuclear part IEP Predicted GO
CC GO:0044451 nucleoplasm part IEP Predicted GO
BP GO:0045116 protein neddylation IEP Predicted GO
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Predicted GO
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:2001070 starch binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001650 Helicase_C 752 894
IPR004179 Sec63-dom 1018 1320
IPR011545 DEAD/DEAH_box_helicase_dom 1365 1533
IPR004179 Sec63-dom 1850 2167
IPR011545 DEAD/DEAH_box_helicase_dom 518 694
No external refs found!