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  5. Glyma.18G026000

Glyma.18G026000


Description : Clathrin, heavy chain


Gene families : OG_42_0001928 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001928_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.18G026000
Cluster HCCA clusters: Cluster_443

Target Alias Description ECC score Gene Family Method Actions
149750 No alias Clathrin, heavy chain 0.02 Orthogroups_2024-Update
At3g11130 No alias Clathrin heavy chain 1 [Source:UniProtKB/Swiss-Prot;Acc:Q0WNJ6] 0.04 Orthogroups_2024-Update
Bradi4g26877 No alias Clathrin, heavy chain 0.04 Orthogroups_2024-Update
Bradi4g44977 No alias Clathrin, heavy chain 0.05 Orthogroups_2024-Update
Cre02.g101400 No alias Clathrin, heavy chain 0.04 Orthogroups_2024-Update
Kfl00232_0230 kfl00232_0230_v1.1 (at3g11130 : 2670.0) Clathrin, heavy chain; FUNCTIONS... 0.03 Orthogroups_2024-Update
Pp1s147_10V6 No alias F9F8.6; clathrin heavy chain, putative [KO:K04646]... 0.03 Orthogroups_2024-Update
Seita.7G333500.1 No alias heavy chain of clathrin triskelion 0.03 Orthogroups_2024-Update
Seita.8G020100.1 No alias heavy chain of clathrin triskelion 0.04 Orthogroups_2024-Update
Sobic.005G003300.1 No alias heavy chain of clathrin triskelion 0.03 Orthogroups_2024-Update
Sobic.008G003700.1 No alias heavy chain of clathrin triskelion 0.06 Orthogroups_2024-Update
evm.model.tig00000042.11 No alias (at3g08530 : 1751.0) Clathrin, heavy chain; FUNCTIONS... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005198 structural molecule activity IEA InterProScan predictions
BP GO:0006886 intracellular protein transport IEA InterProScan predictions
BP GO:0016192 vesicle-mediated transport IEA InterProScan predictions
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEA InterProScan predictions
CC GO:0030132 clathrin coat of coated pit IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003980 UDP-glucose:glycoprotein glucosyltransferase activity IEP Predicted GO
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005086 ARF guanyl-nucleotide exchange factor activity IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
CC GO:0005856 cytoskeleton IEP Predicted GO
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Predicted GO
MF GO:0008092 cytoskeletal protein binding IEP Predicted GO
MF GO:0008138 protein tyrosine/serine/threonine phosphatase activity IEP Predicted GO
BP GO:0009966 regulation of signal transduction IEP Predicted GO
BP GO:0010646 regulation of cell communication IEP Predicted GO
MF GO:0015631 tubulin binding IEP Predicted GO
CC GO:0016592 mediator complex IEP Predicted GO
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Predicted GO
CC GO:0017119 Golgi transport complex IEP Predicted GO
MF GO:0019899 enzyme binding IEP Predicted GO
BP GO:0023051 regulation of signaling IEP Predicted GO
CC GO:0030119 AP-type membrane coat adaptor complex IEP Predicted GO
CC GO:0030126 COPI vesicle coat IEP Predicted GO
CC GO:0030127 COPII vesicle coat IEP Predicted GO
CC GO:0030131 clathrin adaptor complex IEP Predicted GO
BP GO:0032012 regulation of ARF protein signal transduction IEP Predicted GO
MF GO:0043015 gamma-tubulin binding IEP Predicted GO
BP GO:0046578 regulation of Ras protein signal transduction IEP Predicted GO
BP GO:0048583 regulation of response to stimulus IEP Predicted GO
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Predicted GO
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Predicted GO
CC GO:0099023 tethering complex IEP Predicted GO
BP GO:1902531 regulation of intracellular signal transduction IEP Predicted GO
InterPro domains Description Start Stop
IPR015348 Clathrin_H-chain_linker_core 344 367
IPR000547 Clathrin_H-chain/VPS_repeat 557 690
IPR000547 Clathrin_H-chain/VPS_repeat 1440 1579
IPR000547 Clathrin_H-chain/VPS_repeat 993 1132
IPR000547 Clathrin_H-chain/VPS_repeat 1292 1431
IPR000547 Clathrin_H-chain/VPS_repeat 1147 1281
IPR000547 Clathrin_H-chain/VPS_repeat 850 982
IPR000547 Clathrin_H-chain/VPS_repeat 701 840
IPR022365 Clathrin_H-chain_propeller_rpt 154 197
IPR022365 Clathrin_H-chain_propeller_rpt 20 56
No external refs found!