1. Home
  2. Species
  3. Glycine max
  4. Sequence
  5. Glyma.19G000100

Glyma.19G000100


Description : Pentatricopeptide repeat (PPR-like) superfamily protein


Gene families : OG_42_0009572 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0009572_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.19G000100
Cluster HCCA clusters: Cluster_249

Target Alias Description ECC score Gene Family Method Actions
At2g32630 No alias Pentatricopeptide repeat-containing protein At2g32630... 0.05 Orthogroups_2024-Update
Solyc10g084080 No alias Pentatricopeptide repeat superfamily protein, putative... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity IEP Predicted GO
CC GO:0005622 intracellular IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
MF GO:0008094 DNA-dependent ATPase activity IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0019239 deaminase activity IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
MF GO:0061505 DNA topoisomerase II activity IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 232 291
IPR002885 Pentatricopeptide_repeat 450 483
IPR002885 Pentatricopeptide_repeat 560 606
IPR002885 Pentatricopeptide_repeat 385 433
IPR002885 Pentatricopeptide_repeat 315 363
IPR002885 Pentatricopeptide_repeat 489 537
IPR002885 Pentatricopeptide_repeat 180 204
No external refs found!