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  5. Glyma.19G047600

Glyma.19G047600


Description : MADS-box transcription factor family protein


Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Glycine release: Glyma.19G047600
Cluster HCCA clusters: Cluster_38

Target Alias Description ECC score Gene Family Method Actions
A4A49_29655 No alias floral homeotic protein globosa 0.04 Orthogroups_2024-Update
At1g24260 No alias At1g24260 [Source:UniProtKB/TrEMBL;Acc:B4F7R9] 0.05 Orthogroups_2024-Update
Bradi2g38695 No alias MADS-box transcription factor family protein 0.03 Orthogroups_2024-Update
Brara.E00310.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
Brara.I02486.1 No alias MADS/AGL-type transcription factor 0.04 Orthogroups_2024-Update
Glyma.09G266400 No alias AGAMOUS-like 6 0.03 Orthogroups_2024-Update
HORVU5Hr1G095630.3 No alias regulatory protein *(AP1/CAL/FUL) of floral meristem... 0.03 Orthogroups_2024-Update
HORVU6Hr1G002330.8 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os04g49150 No alias OsMADS17 - MADS-box family gene with MIKCc type-box, expressed 0.03 Orthogroups_2024-Update
LOC_Os09g32948 No alias OsMADS8 - MADS-box family gene with MIKCc type-box, expressed 0.04 Orthogroups_2024-Update
PSME_00050982-RA No alias (at4g11880 : 108.0) AGL12, AGL14, and AGL17 are all... 0.03 Orthogroups_2024-Update
Pp1s118_161V6 No alias mikc* mads-box transcription factor 0.02 Orthogroups_2024-Update
Pp1s8_101V6 No alias mikc* mads-box transcription factor 0.03 Orthogroups_2024-Update
Seita.4G160200.1 No alias MADS/AGL-type transcription factor 0.03 Orthogroups_2024-Update
Solyc03g006830 No alias MADS-box transcription factor FYFL (AHRD V3.3 *** W5S185_SOLLC) 0.03 Orthogroups_2024-Update
Solyc06g035570 No alias No description available 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA InterProScan predictions
MF GO:0046983 protein dimerization activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
CC GO:0005787 signal peptidase complex IEP Predicted GO
BP GO:0006465 signal peptide processing IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
BP GO:0016485 protein processing IEP Predicted GO
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Predicted GO
CC GO:0046540 U4/U6 x U5 tri-snRNP complex IEP Predicted GO
MF GO:0050660 flavin adenine dinucleotide binding IEP Predicted GO
BP GO:0051604 protein maturation IEP Predicted GO
CC GO:0097525 spliceosomal snRNP complex IEP Predicted GO
CC GO:0097526 spliceosomal tri-snRNP complex IEP Predicted GO
CC GO:0120114 Sm-like protein family complex IEP Predicted GO
CC GO:1905368 peptidase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR002100 TF_MADSbox 11 50
No external refs found!