Description : pentatricopeptide repeat-containing protein
Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Nicotiana release: A4A49_05242 | |
Cluster | HCCA clusters: Cluster_32 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
92008 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.02 | Orthogroups_2024-Update | |
HORVU2Hr1G012210.2 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
HORVU2Hr1G053030.5 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
HORVU3Hr1G073540.14 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
HORVU3Hr1G085770.2 | No alias | RNA editing factor *(CRR2) | 0.03 | Orthogroups_2024-Update | |
PSME_00005383-RA | No alias | (at3g12770 : 329.0) Encodes a pentatricopeptide repeat... | 0.01 | Orthogroups_2024-Update | |
PSME_00033106-RA | No alias | (at1g11290 : 489.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
PSME_00056336-RA | No alias | (at1g11290 : 707.0) Pentatricopeptide Repeat Protein... | 0.03 | Orthogroups_2024-Update | |
Potri.003G191000 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Potri.006G245300 | No alias | Function unknown | 0.03 | Orthogroups_2024-Update | |
Potri.018G067500 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
Seita.2G001800.1 | No alias | RNA editing factor *(ELI1) | 0.03 | Orthogroups_2024-Update | |
Seita.4G090100.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
Seita.5G176900.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
Solyc01g020340 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.03 | Orthogroups_2024-Update | |
Solyc05g006800 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.03 | Orthogroups_2024-Update | |
Solyc11g005960 | No alias | Pentatricopeptide repeat-containing protein (AHRD V3.3... | 0.03 | Orthogroups_2024-Update | |
Sopen01g002910 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update | |
Sopen01g032600 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
Sopen01g041280 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
Sopen02g025050 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
Sopen02g033370 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
Sopen03g024500 | No alias | PPR repeat | 0.02 | Orthogroups_2024-Update | |
Sopen03g026730 | No alias | PPR repeat | 0.02 | Orthogroups_2024-Update | |
Sopen03g038830 | No alias | PPR repeat family | 0.03 | Orthogroups_2024-Update | |
Sopen04g008620 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update | |
Sopen05g007940 | No alias | PPR repeat family | 0.02 | Orthogroups_2024-Update | |
Sopen09g031050 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update | |
Sopen09g033130 | No alias | PPR repeat family | 0.04 | Orthogroups_2024-Update | |
Sopen11g006690 | No alias | PPR repeat | 0.03 | Orthogroups_2024-Update | |
evm.model.tig00001038.5 | No alias | no hits & (original description: no original description) | 0.01 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0008270 | zinc ion binding | IEA | InterProScan predictions |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No Predicted GO terms available for this sequence |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR002885 | Pentatricopeptide_repeat | 322 | 370 |
IPR002885 | Pentatricopeptide_repeat | 423 | 470 |
IPR002885 | Pentatricopeptide_repeat | 190 | 237 |
IPR032867 | DYW_dom | 598 | 720 |
IPR002885 | Pentatricopeptide_repeat | 266 | 292 |
IPR002885 | Pentatricopeptide_repeat | 296 | 318 |
IPR002885 | Pentatricopeptide_repeat | 498 | 522 |
No external refs found! |