Sopen10g030850

Description : Zinc finger C-x8-C-x5-C-x3-H type (and similar)

Gene families : OG_42_0002653 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002653_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen10g030850
Cluster	HCCA clusters: Cluster_118

Target	Alias	Description	ECC score	Gene Family Method
Brara.J02141.1	No alias	regulatory factor *(TZF) of mRNA stress granule formation	0.03	Orthogroups_2024-Update
LOC_Os03g49170	No alias	zinc finger family protein, putative, expressed	0.03	Orthogroups_2024-Update
MA_11306g0010	No alias	(at2g41900 : 518.0) CCCH-type zinc finger protein with...	0.02	Orthogroups_2024-Update
MA_329868g0010	No alias	(at2g41900 : 509.0) CCCH-type zinc finger protein with...	0.04	Orthogroups_2024-Update
Solyc10g080260	No alias	Zinc finger transcription factor 62	0.06	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	IEA	InterProScan predictions

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000571	Znf_CCCH	43	63

External Links

No external refs found!