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Description : LOW QUALITY:50S ribosomal protein L25, putative (AHRD V3.3 *** B9S8K5_RICCO)
Gene families : OG_42_0003087 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003087_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Solanum release: Solyc02g090420 | |
| Cluster | HCCA clusters: Cluster_205 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Brara.G01215.1 | No alias | component *(bL25m) of large mitoribosomal-subunit proteome | 0.04 | Orthogroups_2024-Update | |
| Cre02.g081450 | No alias | Ribosomal protein L25/Gln-tRNA synthetase,... | 0.02 | Orthogroups_2024-Update | |
| HORVU3Hr1G051530.1 | No alias | component *(bL25m) of large mitoribosomal-subunit proteome | 0.07 | Orthogroups_2024-Update | |
| HORVU4Hr1G013640.1 | No alias | component *(bL25m) of large mitoribosomal-subunit proteome | 0.03 | Orthogroups_2024-Update | |
| Sobic.003G205400.1 | No alias | component *(bL25m) of large mitoribosomal-subunit proteome | 0.09 | Orthogroups_2024-Update | |
| Sopen02g035120 | No alias | Ribosomal protein TL5, C-terminal domain | 0.05 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0001522 | pseudouridine synthesis | IEP | Predicted GO |
| MF | GO:0003676 | nucleic acid binding | IEP | Predicted GO |
| MF | GO:0003723 | RNA binding | IEP | Predicted GO |
| MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | Predicted GO |
| CC | GO:0005634 | nucleus | IEP | Predicted GO |
| CC | GO:0005759 | mitochondrial matrix | IEP | Predicted GO |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Predicted GO |
| BP | GO:0006325 | chromatin organization | IEP | Predicted GO |
| BP | GO:0006334 | nucleosome assembly | IEP | Predicted GO |
| BP | GO:0006351 | transcription, DNA-templated | IEP | Predicted GO |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Predicted GO |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0009451 | RNA modification | IEP | Predicted GO |
| MF | GO:0009982 | pseudouridine synthase activity | IEP | Predicted GO |
| BP | GO:0016070 | RNA metabolic process | IEP | Predicted GO |
| BP | GO:0016485 | protein processing | IEP | Predicted GO |
| MF | GO:0016779 | nucleotidyltransferase activity | IEP | Predicted GO |
| BP | GO:0022607 | cellular component assembly | IEP | Predicted GO |
| BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | Predicted GO |
| CC | GO:0031974 | membrane-enclosed lumen | IEP | Predicted GO |
| BP | GO:0032774 | RNA biosynthetic process | IEP | Predicted GO |
| MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | Predicted GO |
| BP | GO:0034622 | cellular protein-containing complex assembly | IEP | Predicted GO |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predicted GO |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Predicted GO |
| BP | GO:0034728 | nucleosome organization | IEP | Predicted GO |
| BP | GO:0042254 | ribosome biogenesis | IEP | Predicted GO |
| BP | GO:0043085 | positive regulation of catalytic activity | IEP | Predicted GO |
| CC | GO:0043226 | organelle | IEP | Predicted GO |
| CC | GO:0043227 | membrane-bounded organelle | IEP | Predicted GO |
| CC | GO:0043229 | intracellular organelle | IEP | Predicted GO |
| CC | GO:0043231 | intracellular membrane-bounded organelle | IEP | Predicted GO |
| CC | GO:0043233 | organelle lumen | IEP | Predicted GO |
| BP | GO:0043933 | protein-containing complex subunit organization | IEP | Predicted GO |
| BP | GO:0044085 | cellular component biogenesis | IEP | Predicted GO |
| BP | GO:0044093 | positive regulation of molecular function | IEP | Predicted GO |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Predicted GO |
| CC | GO:0044424 | intracellular part | IEP | Predicted GO |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Predicted GO |
| BP | GO:0050790 | regulation of catalytic activity | IEP | Predicted GO |
| BP | GO:0051604 | protein maturation | IEP | Predicted GO |
| BP | GO:0065003 | protein-containing complex assembly | IEP | Predicted GO |
| BP | GO:0065004 | protein-DNA complex assembly | IEP | Predicted GO |
| BP | GO:0065009 | regulation of molecular function | IEP | Predicted GO |
| CC | GO:0070013 | intracellular organelle lumen | IEP | Predicted GO |
| BP | GO:0071824 | protein-DNA complex subunit organization | IEP | Predicted GO |
| BP | GO:0071840 | cellular component organization or biogenesis | IEP | Predicted GO |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Predicted GO |
| BP | GO:0097659 | nucleic acid-templated transcription | IEP | Predicted GO |
| MF | GO:0097747 | RNA polymerase activity | IEP | Predicted GO |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR020057 | Ribosomal_L25_b-dom | 153 | 237 |
| No external refs found! |