Sopen10g035380


Description : Ribosomal protein L4/L1 family


Gene families : OG_42_0001916 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001916_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen10g035380
Cluster HCCA clusters: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
166994 No alias Ribosomal protein L4/L1 family 0.15 Orthogroups_2024-Update
At3g09630 No alias 60S ribosomal protein L4-1... 0.05 Orthogroups_2024-Update
At5g02870 No alias 60S ribosomal protein L4-2... 0.03 Orthogroups_2024-Update
Bradi1g05510 No alias Ribosomal protein L4/L1 family 0.22 Orthogroups_2024-Update
Bradi1g55510 No alias Ribosomal protein L4/L1 family 0.19 Orthogroups_2024-Update
Brara.A03522.1 No alias component *(uL4) of large ribosomal-subunit (LSU) proteome 0.26 Orthogroups_2024-Update
Brara.C00088.1 No alias component *(uL4) of large ribosomal-subunit (LSU) proteome 0.1 Orthogroups_2024-Update
Brara.C03264.1 No alias component *(uL4) of large ribosomal-subunit (LSU) proteome 0.04 Orthogroups_2024-Update
Brara.E03076.1 No alias component *(uL4) of large ribosomal-subunit (LSU) proteome 0.25 Orthogroups_2024-Update
Brara.J02849.1 No alias component *(uL4) of large ribosomal-subunit (LSU) proteome 0.26 Orthogroups_2024-Update
Cre09.g397697 No alias Ribosomal protein L4/L1 family 0.09 Orthogroups_2024-Update
GRMZM2G007695 No alias Ribosomal protein L4/L1 family 0.14 Orthogroups_2024-Update
GRMZM2G100403 No alias Ribosomal protein L4/L1 family 0.15 Orthogroups_2024-Update
Glyma.03G177400 No alias Ribosomal protein L4/L1 family 0.05 Orthogroups_2024-Update
Glyma.10G048600 No alias Ribosomal protein L4/L1 family 0.21 Orthogroups_2024-Update
Glyma.13G136400 No alias Ribosomal protein L4/L1 family 0.13 Orthogroups_2024-Update
HORVU4Hr1G075710.1 No alias component *(uL4) of large ribosomal-subunit (LSU) proteome 0.14 Orthogroups_2024-Update
HORVU5Hr1G105870.1 No alias component *(uL4) of large ribosomal-subunit (LSU) proteome 0.12 Orthogroups_2024-Update
Kfl00456_0100 kfl00456_0100_v1.1 (at3g09630 : 489.0) Ribosomal protein L4/L1 family;... 0.14 Orthogroups_2024-Update
LOC_Os07g08330 No alias ribosomal protein L4, putative, expressed 0.02 Orthogroups_2024-Update
Mp4g20310.1 No alias component RPL4 of LSU proteome component 0.12 Orthogroups_2024-Update
PSME_00003145-RA No alias (at3g09630 : 579.0) Ribosomal protein L4/L1 family;... 0.04 Orthogroups_2024-Update
PSME_00003150-RA No alias (at3g09630 : 531.0) Ribosomal protein L4/L1 family;... 0.03 Orthogroups_2024-Update
Potri.016G084400 No alias Ribosomal protein L4/L1 family 0.06 Orthogroups_2024-Update
Potri.T159800 No alias Ribosomal protein L4/L1 family 0.08 Orthogroups_2024-Update
Pp1s10_102V6 No alias 60s ribosomal protein l4 0.14 Orthogroups_2024-Update
Pp1s10_369V6 No alias 60s ribosomal protein l4 0.02 Orthogroups_2024-Update
Pp1s18_113V6 No alias 60s ribosomal protein l4 0.07 Orthogroups_2024-Update
Pp1s40_305V6 No alias 60s ribosomal protein l4 0.18 Orthogroups_2024-Update
Seita.2G055300.1 No alias component *(uL4) of large ribosomal-subunit (LSU) proteome 0.21 Orthogroups_2024-Update
Seita.9G056000.1 No alias component *(uL4) of large ribosomal-subunit (LSU) proteome 0.1 Orthogroups_2024-Update
Sobic.001G057300.1 No alias component *(uL4) of large ribosomal-subunit (LSU) proteome 0.23 Orthogroups_2024-Update
Sobic.002G054000.1 No alias component *(uL4) of large ribosomal-subunit (LSU) proteome 0.27 Orthogroups_2024-Update
Solyc09g007250 No alias 60S ribosomal protein L4 (AHRD V3.3 *** RL4_PRUAR) 0.19 Orthogroups_2024-Update
Solyc10g084350 No alias 60S ribosomal L4 (AHRD V3.3 *** A0A0B0NGW3_GOSAR) 0.09 Orthogroups_2024-Update
Solyc10g086010 No alias 60S ribosomal L4 (AHRD V3.3 *** A0A0B0NGW3_GOSAR) 0.35 Orthogroups_2024-Update
Sopen09g002120 No alias Ribosomal protein L4/L1 family 0.12 Orthogroups_2024-Update
evm.model.contig_2049.5 No alias (at3g09630 : 394.0) Ribosomal protein L4/L1 family;... 0.11 Orthogroups_2024-Update
evm.model.tig00022075.53 No alias (at3g09630 : 404.0) Ribosomal protein L4/L1 family;... 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR025755 Ribos_L4_C_dom 249 322
IPR002136 Ribosomal_L4/L1e 2 236
No external refs found!