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  5. Sopen11g004170

Sopen11g004170


Description : RNA pseudouridylate synthase


Gene families : OG_42_0006150 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006150_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen11g004170
Cluster HCCA clusters: Cluster_71

Target Alias Description ECC score Gene Family Method Actions
Bradi1g74850 No alias pseudouridine synthase family protein 0.03 Orthogroups_2024-Update
Brara.E00643.1 No alias plastidial rRNA pseudouridine synthase *(SVR1) 0.05 Orthogroups_2024-Update
HORVU4Hr1G072220.1 No alias plastidial rRNA pseudouridine synthase *(SVR1) 0.03 Orthogroups_2024-Update
Kfl00632_0060 kfl00632_0060_v1.1 (at2g39140 : 256.0) Suppressor of var2 variegation... 0.01 Orthogroups_2024-Update
Seita.9G536900.1 No alias plastidial rRNA pseudouridine synthase *(SVR1) 0.05 Orthogroups_2024-Update
evm.model.contig_460.7 No alias (at2g39140 : 87.8) Suppressor of var2 variegation... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEA InterProScan predictions
MF GO:0003723 RNA binding IEA InterProScan predictions
BP GO:0009451 RNA modification IEA InterProScan predictions
MF GO:0009982 pseudouridine synthase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002942 S4_RNA-bd 48 90
IPR006145 PsdUridine_synth_RsuA/RluD 111 249
No external refs found!