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  5. A4A49_41691

A4A49_41691


Description : e3 ubiquitin-protein ligase sdir1


Gene families : OG_42_0000043 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000043_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Nicotiana release: A4A49_41691
Cluster HCCA clusters: Cluster_46

Target Alias Description ECC score Gene Family Method Actions
Brara.G00930.1 No alias E3 ubiquitin ligase *(SNIPER) 0.04 Orthogroups_2024-Update
Brara.H00234.1 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Glyma.02G108300 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
HORVU0Hr1G002870.3 No alias Unknown function 0.04 Orthogroups_2024-Update
HORVU6Hr1G034800.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU6Hr1G072430.1 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os03g22830 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os12g04450 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.03 Orthogroups_2024-Update
MA_77269g0010 No alias (at3g46620 : 139.0) zinc finger (C3HC4-type RING finger)... 0.05 Orthogroups_2024-Update
PSME_00002061-RA No alias (at3g19950 : 146.0) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
PSME_00021656-RA No alias (at3g46620 : 181.0) zinc finger (C3HC4-type RING finger)... 0.03 Orthogroups_2024-Update
PSME_00056956-RA No alias (at2g40830 : 186.0) Encodes a putative RING-H2 finger... 0.03 Orthogroups_2024-Update
Seita.2G181600.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.5G351000.1 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Seita.8G172700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sopen03g029300 No alias Ring finger domain 0.02 Orthogroups_2024-Update
Sopen04g004300 No alias Ring finger domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001841 Znf_RING 192 234
No external refs found!