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  5. Potri.001G171900

Potri.001G171900


Description : Pectin lyase-like superfamily protein


Gene families : OG_42_0000306 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000306_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Populus release: Potri.001G171900
Cluster HCCA clusters: cluster_0087

Target Alias Description ECC score Gene Family Method Actions
A4A49_14444 No alias putative polygalacturonase 0.05 Orthogroups_2024-Update
Brara.G00978.1 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
Brara.H02210.1 No alias EC_3.2 glycosylase 0.03 Orthogroups_2024-Update
MA_96282g0010 No alias no hits & (original description: no original description) 0.05 Orthogroups_2024-Update
PSME_00001783-RA No alias (at1g23460 : 412.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
PSME_00020731-RA No alias (p35336|pglr_actch : 318.0) Polygalacturonase precursor... 0.02 Orthogroups_2024-Update
PSME_00025694-RA No alias (at1g80170 : 422.0) Pectin lyase-like superfamily... 0.02 Orthogroups_2024-Update
Potri.016G054800 No alias polygalacturonase abscission zone A. thaliana 0.03 Orthogroups_2024-Update
Seita.5G383600.1 No alias EC_3.2 glycosylase 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEA InterProScan predictions
BP GO:0005975 carbohydrate metabolic process IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 79 398
No external refs found!