Sopen12g002280

Description : DEAD/DEAH box helicase

Gene families : OG_42_0000844 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000844_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen12g002280
Cluster	HCCA clusters: Cluster_71

Target	Alias	Description	ECC score	Gene Family Method
10677	No alias	DEAD box RNA helicase (RH3)	0.03	Orthogroups_2024-Update
Bradi1g03180	No alias	DEAD box RNA helicase (RH3)	0.07	Orthogroups_2024-Update
Cre03.g200095	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.02	Orthogroups_2024-Update
Glyma.03G226600	No alias	DEAD box RNA helicase (RH3)	0.03	Orthogroups_2024-Update
Glyma.10G241900	No alias	DEAD box RNA helicase (PRH75)	0.04	Orthogroups_2024-Update
PSME_00018109-RA	No alias	(at5g26742 : 768.0) embryo defective 1138 (emb1138);...	0.02	Orthogroups_2024-Update
Potri.005G000500	No alias	DEAD box RNA helicase (RH3)	0.04	Orthogroups_2024-Update
Pp1s54_79V6	No alias	nucleolar rna helicase 2	0.02	Orthogroups_2024-Update
Pp1s7_15V6	No alias	dead deah box helicase family expressed	0.05	Orthogroups_2024-Update
Seita.9G027200.1	No alias	group-II intron splicing RNA helicase *(RH3)	0.02	Orthogroups_2024-Update
Sobic.001G028100.1	No alias	group-II intron splicing RNA helicase *(RH3)	0.02	Orthogroups_2024-Update
Solyc08g042050	No alias	RNA helicase DEAD25	0.09	Orthogroups_2024-Update
Solyc12g006320	No alias	RNA helicase DEAD35	0.03	Orthogroups_2024-Update
evm.model.tig00000093.151	No alias	(at5g26742 : 291.0) embryo defective 1138 (emb1138);...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
MF	GO:0008144	drug binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	330	438
IPR011545	DEAD/DEAH_box_helicase_dom	123	290

External Links

No external refs found!