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  5. Sopen12g002800

Sopen12g002800


Description : Core histone H2A/H2B/H3/H4


Gene families : OG_42_0000970 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000970_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen12g002800
Cluster HCCA clusters: Cluster_68

Target Alias Description ECC score Gene Family Method Actions
Brara.A03119.1 No alias histone *(H2A) 0.02 Orthogroups_2024-Update
Brara.D00458.1 No alias histone *(H2A) 0.03 Orthogroups_2024-Update
Glyma.06G071500 No alias histone H2A protein 9 0.03 Orthogroups_2024-Update
Glyma.06G214900 No alias histone H2A protein 9 0.03 Orthogroups_2024-Update
Kfl00107_0200 kfl00107_0200_v1.1 (q84mp7|h2av3_orysa : 187.0) Probable histone H2A... 0.02 Orthogroups_2024-Update
LOC_Os10g28230 No alias Core histone H2A/H2B/H3/H4 domain containing protein,... 0.02 Orthogroups_2024-Update
Pp1s219_44V6 No alias histone 2 0.02 Orthogroups_2024-Update
Solyc06g084090 No alias Histone H2A (AHRD V3.3 *** K4CAR4_SOLLC) 0.02 Orthogroups_2024-Update
Solyc12g006830 No alias Histone H2A (AHRD V3.3 *** M0ZKK1_SOLTU) 0.02 Orthogroups_2024-Update
evm.model.tig00021108.27 No alias (q8h7y8|h2av1_orysa : 197.0) Probable histone H2A... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA InterProScan predictions
MF GO:0003677 DNA binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 15 104
IPR032454 Histone_H2A_C 105 134
No external refs found!