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  5. Sopen12g004670

Sopen12g004670


Description : Leucine Rich repeats (2 copies)


Gene families : OG_42_0000110 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000110_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen12g004670
Cluster HCCA clusters: Cluster_160

Target Alias Description ECC score Gene Family Method Actions
LOC_Os12g11680 No alias verticillium wilt disease resistance protein precursor,... 0.03 Orthogroups_2024-Update
LOC_Os12g12130 No alias verticillium wilt disease resistance protein, putative, expressed 0.03 Orthogroups_2024-Update
Seita.5G116300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.6G164100.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc01g005870 No alias Leucine-rich repeat receptor-like protein kinase family... 0.03 Orthogroups_2024-Update
Solyc12g100030 No alias LOW QUALITY:Leucine-rich-repeat receptor-like protein... 0.03 Orthogroups_2024-Update
Sopen03g022530 No alias Leucine rich repeat N-terminal domain 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001611 Leu-rich_rpt 1945 2004
IPR001611 Leu-rich_rpt 1349 1408
IPR001611 Leu-rich_rpt 334 393
IPR001611 Leu-rich_rpt 793 850
IPR001611 Leu-rich_rpt 575 631
IPR001611 Leu-rich_rpt 1206 1265
IPR001611 Leu-rich_rpt 2111 2172
IPR001611 Leu-rich_rpt 1086 1144
IPR001611 Leu-rich_rpt 430 489
IPR001611 Leu-rich_rpt 1565 1622
IPR001611 Leu-rich_rpt 2041 2100
IPR013210 LRR_N_plant-typ 34 84
IPR001611 Leu-rich_rpt 285 307
No external refs found!