1. Home
  2. Species
  3. Populus trichocarpa
  4. Sequence
  5. Potri.006G032100

Potri.006G032100


Description : RING-H2 finger C1A


Gene families : OG_42_0000043 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000043_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Populus release: Potri.006G032100
Cluster HCCA clusters: cluster_0029

Target Alias Description ECC score Gene Family Method Actions
A4A49_23663 No alias e3 ubiquitin-protein ligase cip8 0.03 Orthogroups_2024-Update
At5g64920 No alias CIP8 [Source:UniProtKB/TrEMBL;Acc:A0A178UJC6] 0.04 Orthogroups_2024-Update
Brara.C00329.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.E00191.1 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Brara.G00930.1 No alias E3 ubiquitin ligase *(SNIPER) 0.03 Orthogroups_2024-Update
Brara.H02157.1 No alias E3 ubiquitin ligase *(SNIPER) 0.03 Orthogroups_2024-Update
Brara.I05006.1 No alias E3 ubiquitin ligase *(SNIPER) 0.03 Orthogroups_2024-Update
Glyma.02G161600 No alias RING-H2 finger C1A 0.03 Orthogroups_2024-Update
Glyma.09G165200 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.10G285300 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Kfl00113_0130 kfl00113_0130_v1.1 (at5g20910 : 134.0) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
LOC_Os03g22830 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.05 Orthogroups_2024-Update
Seita.1G304500.1 No alias Unknown function 0.01 Orthogroups_2024-Update
Seita.2G181600.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.5G351000.1 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Seita.6G031500.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Sobic.004G332500.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Solyc01g009000 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT3G56580.3) 0.02 Orthogroups_2024-Update
Solyc03g098590 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT3G19950.3) 0.04 Orthogroups_2024-Update
Sopen05g003750 No alias Ring finger domain 0.03 Orthogroups_2024-Update
evm.model.contig_2210.2 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
evm.model.contig_2287.2 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0061630 ubiquitin protein ligase activity IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001841 Znf_RING 185 227
IPR039525 RNF126-like_zinc-ribbon 6 37
No external refs found!