Sopen12g009300

Description : tRNA synthetases class I (I, L, M and V)

Gene families : OG_42_0001575 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001575_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen12g009300
Cluster	HCCA clusters: Cluster_71

Target	Alias	Description	ECC score	Gene Family Method
Bradi1g56890	No alias	ATP binding;valine-tRNA ligases;aminoacyl-tRNA...	0.05	Orthogroups_2024-Update
Brara.J01858.1	No alias	EC_6.1 ligase forming carbon-oxygen bond & valine-tRNA ligase	0.02	Orthogroups_2024-Update
GRMZM5G871297	No alias	ATP binding;valine-tRNA ligases;aminoacyl-tRNA...	0.04	Orthogroups_2024-Update
Glyma.10G239500	No alias	valyl-tRNA synthetase / valine--tRNA ligase (VALRS)	0.03	Orthogroups_2024-Update
Glyma.17G186800	No alias	ATP binding;valine-tRNA ligases;aminoacyl-tRNA...	0.03	Orthogroups_2024-Update
Glyma.17G186900	No alias	ATP binding;valine-tRNA ligases;aminoacyl-tRNA...	0.03	Orthogroups_2024-Update
Kfl00106_0070	kfl00106_0070_v1.1	(at5g16715 : 1236.0) embryo defective 2247 (EMB2247);...	0.01	Orthogroups_2024-Update
Mp2g20730.1	No alias	valine-tRNA ligase	0.03	Orthogroups_2024-Update
PSME_00005456-RA	No alias	(at5g16715 : 291.0) embryo defective 2247 (EMB2247);...	0.02	Orthogroups_2024-Update
Pp1s70_257V6	No alias	valyl-trna synthetase	0.02	Orthogroups_2024-Update
Pp1s84_125V6	No alias	valyl trna synthetase	0.03	Orthogroups_2024-Update
Seita.2G041900.1	No alias	EC_6.1 ligase forming carbon-oxygen bond & valine-tRNA ligase	0.04	Orthogroups_2024-Update
Sobic.002G042500.1	No alias	EC_6.1 ligase forming carbon-oxygen bond & valine-tRNA ligase	0.02	Orthogroups_2024-Update
Sobic.007G054800.1	No alias	EC_6.1 ligase forming carbon-oxygen bond & valine-tRNA ligase	0.02	Orthogroups_2024-Update
Solyc12g019100	No alias	Valyl-tRNA synthetase, putative (AHRD V3.3 *** B9SYX1_RICCO)	0.06	Orthogroups_2024-Update
Solyc12g019110	No alias	Valyl-tRNA synthetase (AHRD V3.3 *** A0A151SWL9_CAJCA)	0.06	Orthogroups_2024-Update
evm.model.contig_2016.16	No alias	(at5g16715 : 936.0) embryo defective 2247 (EMB2247);...	0.02	Orthogroups_2024-Update
evm.model.tig00000402.37	No alias	(at5g16715 : 948.0) embryo defective 2247 (EMB2247);...	0.04	Orthogroups_2024-Update
evm.model.tig00001130.5	No alias	(at1g14610 : 789.0) Required for proper proliferation of...	0.01	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEA	InterProScan predictions
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEA	InterProScan predictions
MF	GO:0004832	valine-tRNA ligase activity	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	IEA	InterProScan predictions
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006418	tRNA aminoacylation for protein translation	IEA	InterProScan predictions
BP	GO:0006438	valyl-tRNA aminoacylation	IEA	InterProScan predictions
BP	GO:0006520	cellular amino acid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016874	ligase activity	None	Extended
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
BP	GO:0043038	amino acid activation	None	Extended
BP	GO:0043039	tRNA aminoacylation	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
MF	GO:0140101	catalytic activity, acting on a tRNA	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR013155	M/V/L/I-tRNA-synth_anticd-bd	711	851
IPR002300	aa-tRNA-synth_Ia	96	654
IPR019499	Val-tRNA_synth_tRNA-bd	918	978

External Links

No external refs found!

Sopen12g009300

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation