Sopen12g013640

Description : DEAD/DEAH box helicase

Gene families : OG_42_0000814 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000814_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen12g013640
Cluster	HCCA clusters: Cluster_2

Target	Alias	Description	ECC score	Gene Family Method
A4A49_13551	No alias	atp-dependent rna helicase-like protein db10	0.03	Orthogroups_2024-Update
A4A49_32643	No alias	dead-box atp-dependent rna helicase 20	0.03	Orthogroups_2024-Update
Bradi2g05990	No alias	DEA(D/H)-box RNA helicase family protein	0.02	Orthogroups_2024-Update
Brara.B00559.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Brara.C02943.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
Glyma.05G005500	No alias	DEAD box RNA helicase family protein	0.03	Orthogroups_2024-Update
Glyma.07G010500	No alias	DEA(D/H)-box RNA helicase family protein	0.03	Orthogroups_2024-Update
Glyma.17G085300	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.03	Orthogroups_2024-Update
HORVU3Hr1G024610.13	No alias	Unknown function	0.03	Orthogroups_2024-Update
PSME_00040415-RA	No alias	(at3g01540 : 682.0) RNA HELICASE DRH1; DEAD box RNA...	0.03	Orthogroups_2024-Update
Potri.001G347100	No alias	DEAD box RNA helicase family protein	0.02	Orthogroups_2024-Update
Potri.015G083000	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.04	Orthogroups_2024-Update
Seita.5G139400.1	No alias	regulatory RNA helicase *(RH20/RH30) of virus replication	0.03	Orthogroups_2024-Update
Sobic.003G050700.2	No alias	Unknown function	0.02	Orthogroups_2024-Update
Solyc12g035130	No alias	RNA helicase DEAD36	0.08	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
MF	GO:0008144	drug binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	377	485
IPR011545	DEAD/DEAH_box_helicase_dom	170	339

External Links

No external refs found!