1. Home
  2. Species
  3. Solanum pennellii
  4. Sequence
  5. Sopen12g021150

Sopen12g021150


Description : AAA domain (Cdc48 subfamily)


Gene families : OG_42_0000227 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000227_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen12g021150
Cluster HCCA clusters: Cluster_71

Target Alias Description ECC score Gene Family Method Actions
174539 No alias casein lytic proteinase B3 0.02 Orthogroups_2024-Update
Bradi1g16190 No alias casein lytic proteinase B3 0.02 Orthogroups_2024-Update
Bradi3g44335 No alias CLPC homologue 1 0.05 Orthogroups_2024-Update
Bradi3g44341 No alias CLPC homologue 1 0.06 Orthogroups_2024-Update
Cre12.g533351 No alias heat shock protein 101 0.02 Orthogroups_2024-Update
Glyma.05G201100 No alias CLPC homologue 1 0.02 Orthogroups_2024-Update
Glyma.13G058600 No alias casein lytic proteinase B3 0.04 Orthogroups_2024-Update
LOC_Os03g31300 No alias chaperone protein clpB 1, putative, expressed 0.03 Orthogroups_2024-Update
MA_596288g0010 No alias (at5g50920 : 437.0) Encodes a protein that is similar to... 0.04 Orthogroups_2024-Update
Mp3g09010.1 No alias organellar chaperone (Clp-p|Clp-m) 0.03 Orthogroups_2024-Update
PSME_00014106-RA No alias (at5g15450 : 850.0) Encodes a chloroplast-targeted... 0.03 Orthogroups_2024-Update
PSME_00036597-RA No alias (at5g50920 : 1365.0) Encodes a protein that is similar... 0.03 Orthogroups_2024-Update
Potri.012G105900 No alias CLPC homologue 1 0.02 Orthogroups_2024-Update
Potri.017G090600 No alias casein lytic proteinase B3 0.03 Orthogroups_2024-Update
Pp1s252_87V6 No alias atpase aaa-2 domain protein 0.02 Orthogroups_2024-Update
Pp1s81_51V6 No alias atpase aaa-2 domain protein 0.03 Orthogroups_2024-Update
Seita.7G079400.1 No alias chaperone component *(ClpC) of chloroplast Clp-type... 0.03 Orthogroups_2024-Update
Seita.9G360800.1 No alias organellar chaperone *(Clp-p/Clp-m) 0.03 Orthogroups_2024-Update
Sobic.006G058100.1 No alias chaperone component *(ClpC) of chloroplast Clp-type... 0.03 Orthogroups_2024-Update
Sobic.008G081900.1 No alias chaperone component *(ClpC) of chloroplast Clp-type... 0.03 Orthogroups_2024-Update
Solyc12g042060 No alias ATP-dependent Clp protease ATP-binding subunit ClpA... 0.07 Orthogroups_2024-Update
evm.model.tig00000655.28 No alias (at5g50920 : 1134.0) Encodes a protein that is similar... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA InterProScan predictions
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR003959 ATPase_AAA_core 634 808
IPR003959 ATPase_AAA_core 297 413
IPR004176 Clp_N 106 158
IPR004176 Clp_N 182 233
IPR019489 Clp_ATPase_C 815 895
No external refs found!