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  5. Potri.016G029300

Potri.016G029300


Description : RING-H2 finger C1A


Gene families : OG_42_0000043 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000043_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Populus release: Potri.016G029300
Cluster HCCA clusters: cluster_0014

Target Alias Description ECC score Gene Family Method Actions
A4A49_15281 No alias putative e3 ubiquitin-protein ligase rhc1a 0.03 Orthogroups_2024-Update
At3g02340 No alias At3g02340 [Source:UniProtKB/TrEMBL;Acc:Q9FWA5] 0.04 Orthogroups_2024-Update
At5g64920 No alias CIP8 [Source:UniProtKB/TrEMBL;Acc:A0A178UJC6] 0.07 Orthogroups_2024-Update
Brara.G00930.1 No alias E3 ubiquitin ligase *(SNIPER) 0.03 Orthogroups_2024-Update
Brara.H02157.1 No alias E3 ubiquitin ligase *(SNIPER) 0.02 Orthogroups_2024-Update
Brara.I04140.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.I05006.1 No alias E3 ubiquitin ligase *(SNIPER) 0.03 Orthogroups_2024-Update
LOC_Os03g22830 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os06g42700 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os08g36170 No alias cytokinesis negative regulator RCP1, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os12g02620 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.03 Orthogroups_2024-Update
Seita.4G001100.1 No alias RING-H2-class BTL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Seita.7G303700.1 No alias gibberellin modification enzyme *(ELA) & EC_1.14... 0.02 Orthogroups_2024-Update
Solyc01g009000 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT3G56580.3) 0.06 Orthogroups_2024-Update
Solyc03g114680 No alias RING/U-box superfamily protein (AHRD V3.3 *-* AT5G08139.1) 0.02 Orthogroups_2024-Update
evm.model.contig_2017.1 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
evm.model.contig_2287.2 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0061630 ubiquitin protein ligase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001841 Znf_RING 185 227
IPR039525 RNF126-like_zinc-ribbon 6 37
No external refs found!