Sopen12g031880

Description : DEAD/DEAH box helicase

Gene families : OG_42_0000623 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000623_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Solanum release: Sopen12g031880
Cluster	HCCA clusters: Cluster_110

Target	Alias	Description	ECC score	Gene Family Method
Brara.A02854.1	No alias	helicase component *(eIF4A3) of RNA quality control Exon...	0.02	Orthogroups_2024-Update
Brara.B02039.1	No alias	mRNA unwinding factor *(eIF4A))	0.02	Orthogroups_2024-Update
Brara.E02231.1	No alias	helicase component *(eIF4A3) of RNA quality control Exon...	0.05	Orthogroups_2024-Update
Glyma.15G171800	No alias	eukaryotic translation initiation factor 4A1	0.03	Orthogroups_2024-Update
Mp2g02760.1	No alias	mRNA unwinding factor (eIF4A)	0.04	Orthogroups_2024-Update
Pp1s31_150V6	No alias	Eukaryotic initiation factor 4A-9 (ATP-dependent RNA...	0.03	Orthogroups_2024-Update
Seita.4G242200.1	No alias	mRNA unwinding factor *(eIF4A))	0.12	Orthogroups_2024-Update
Sobic.004G356900.1	No alias	helicase component *(eIF4A3) of RNA quality control Exon...	0.03	Orthogroups_2024-Update
Solyc08g062800	No alias	RNA helicase DEAD26	0.04	Orthogroups_2024-Update
Solyc11g033280	No alias	Dead box ATP-dependent RNA helicase, putative (AHRD V3.3...	0.05	Orthogroups_2024-Update
Solyc12g095990	No alias	RNA helicase DEAD40	0.03	Orthogroups_2024-Update
Sopen08g018310	No alias	DEAD/DEAH box helicase	0.05	Orthogroups_2024-Update
evm.model.contig_454.9	No alias	(p35683\|if4a_orysa : 541.0) Eukaryotic initiation factor...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	InterProScan predictions
MF	GO:0008144	drug binding	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	65	226
IPR001650	Helicase_C	266	374

External Links

No external refs found!