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  5. Sopen12g033760

Sopen12g033760


Description : Ubiquitin family


Gene families : OG_42_0000048 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000048_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Solanum release: Sopen12g033760
Cluster HCCA clusters: Cluster_110

Target Alias Description ECC score Gene Family Method Actions
101548 No alias ubiquitin 5 0.03 Orthogroups_2024-Update
19615 No alias polyubiquitin 10 0.02 Orthogroups_2024-Update
At2g36170 No alias Ubiquitin-60S ribosomal protein L40-1... 0.06 Orthogroups_2024-Update
At2g47110 No alias UBQ6 [Source:UniProtKB/TrEMBL;Acc:A0A178VYW3] 0.03 Orthogroups_2024-Update
Bradi1g68940 No alias Ubiquitin supergroup;Ribosomal protein L40e 0.08 Orthogroups_2024-Update
Bradi4g10327 No alias polyubiquitin 10 0.1 Orthogroups_2024-Update
Bradi4g38540 No alias ubiquitin extension protein 1 0.07 Orthogroups_2024-Update
Brara.C01815.1 No alias component *(eL40) of large ribosomal-subunit (LSU) proteome 0.12 Orthogroups_2024-Update
Brara.C02349.1 No alias component *(eS31) of small ribosomal-subunit (SSU) proteome 0.05 Orthogroups_2024-Update
Brara.D00067.1 No alias component *(eS31) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Brara.E00858.1 No alias component *(eL40) of large ribosomal-subunit (LSU) proteome 0.06 Orthogroups_2024-Update
Brara.E00859.1 No alias component *(eL40) of large ribosomal-subunit (LSU) proteome 0.09 Orthogroups_2024-Update
Brara.G00981.1 No alias component *(eS31) of small ribosomal-subunit (SSU) proteome 0.06 Orthogroups_2024-Update
Brara.G01965.1 No alias component *(eS31) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
Brara.I03230.1 No alias component *(eS31) of small ribosomal-subunit (SSU) proteome 0.03 Orthogroups_2024-Update
Brara.I03566.1 No alias component *(eL40) of large ribosomal-subunit (LSU) proteome 0.1 Orthogroups_2024-Update
Brara.I04302.1 No alias component *(eS31) of small ribosomal-subunit (SSU) proteome 0.1 Orthogroups_2024-Update
Cre01.g007051 No alias Ubiquitin supergroup;Ribosomal protein L40e 0.1 Orthogroups_2024-Update
Cre06.g273600 No alias Ribosomal protein S27a / Ubiquitin family protein 0.11 Orthogroups_2024-Update
GRMZM2G006293 No alias Ribosomal protein S27a / Ubiquitin family protein 0.06 Orthogroups_2024-Update
GRMZM2G047732 No alias Ribosomal protein S27a / Ubiquitin family protein 0.06 Orthogroups_2024-Update
Glyma.01G029200 No alias Ribosomal protein S27a / Ubiquitin family protein 0.03 Orthogroups_2024-Update
Glyma.02G036000 No alias Ribosomal protein S27a / Ubiquitin family protein 0.08 Orthogroups_2024-Update
Glyma.03G197600 No alias ubiquitin extension protein 1 0.02 Orthogroups_2024-Update
Glyma.04G231500 No alias Ubiquitin supergroup;Ribosomal protein L40e 0.03 Orthogroups_2024-Update
Glyma.09G023700 No alias Ribosomal protein S27a / Ubiquitin family protein 0.08 Orthogroups_2024-Update
Glyma.15G129800 No alias Ribosomal protein S27a / Ubiquitin family protein 0.05 Orthogroups_2024-Update
Glyma.19G195500 No alias Ubiquitin supergroup;Ribosomal protein L40e 0.1 Orthogroups_2024-Update
HORVU1Hr1G023660.1 No alias component *(eS31) of small ribosomal-subunit (SSU) proteome 0.08 Orthogroups_2024-Update
HORVU4Hr1G001170.5 No alias component *(eL40) of large ribosomal-subunit (LSU) proteome 0.05 Orthogroups_2024-Update
Kfl00345_0130 kfl00345_0130_v1.... (at3g52590 : 254.0) Ubiquitin extension protein;... 0.07 Orthogroups_2024-Update
LOC_Os05g06770 No alias 40S ribosomal protein S27a, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os10g12620 No alias protein kinase domain containing protein, expressed 0.03 Orthogroups_2024-Update
MA_10435699g0020 No alias (at2g47110 : 231.0) polyubiquitin gene; ubiquitin 6... 0.03 Orthogroups_2024-Update
MA_53043g0010 No alias (at1g31340 : 234.0) Encodes a ubiquitin-related protein... 0.03 Orthogroups_2024-Update
Mp4g02740.1 No alias ubiquitin-fold protein (UBQ) 0.02 Orthogroups_2024-Update
Mp7g14690.1 No alias component RPS27a of SSU proteome 0.08 Orthogroups_2024-Update
Mp8g00780.1 No alias component RPL40 of LSU proteome component 0.1 Orthogroups_2024-Update
Potri.001G025300 No alias ubiquitin 6 0.06 Orthogroups_2024-Update
Potri.012G024300 No alias Ubiquitin supergroup;Ribosomal protein L40e 0.04 Orthogroups_2024-Update
Potri.016G077200 No alias ubiquitin extension protein 1 0.04 Orthogroups_2024-Update
Pp1s13_40V6 No alias ubiquitin extension protein 0.05 Orthogroups_2024-Update
Pp1s184_64V6 No alias ubiquitin extension protein 0.04 Orthogroups_2024-Update
Pp1s241_60V6 No alias ubiquitin fusion protein 0.03 Orthogroups_2024-Update
Pp1s268_35V6 No alias ubiquitin fusion protein 0.02 Orthogroups_2024-Update
Pp1s333_9V6 No alias ubiquitin fusion protein 0.07 Orthogroups_2024-Update
Pp1s56_39V6 No alias ubiquitin extension protein 0.03 Orthogroups_2024-Update
Pp1s56_52V6 No alias ubiquitin extension protein 0.1 Orthogroups_2024-Update
Seita.2G133700.1 No alias component *(eL40) of large ribosomal-subunit (LSU) proteome 0.05 Orthogroups_2024-Update
Seita.5G156000.1 No alias component *(eS31) of small ribosomal-subunit (SSU) proteome 0.04 Orthogroups_2024-Update
Seita.7G270700.1 No alias component *(eS31) of small ribosomal-subunit (SSU) proteome 0.1 Orthogroups_2024-Update
Seita.9G478400.1 No alias component *(eL40) of large ribosomal-subunit (LSU) proteome 0.08 Orthogroups_2024-Update
Sobic.001G444800.1 No alias component *(eL40) of large ribosomal-subunit (LSU) proteome 0.12 Orthogroups_2024-Update
Sobic.002G135200.1 No alias component *(eL40) of large ribosomal-subunit (LSU) proteome 0.11 Orthogroups_2024-Update
Sobic.003G152600.1 No alias component *(eS31) of small ribosomal-subunit (SSU) proteome 0.09 Orthogroups_2024-Update
Sobic.009G054800.1 No alias component *(eS31) of small ribosomal-subunit (SSU) proteome 0.1 Orthogroups_2024-Update
Solyc01g056940 No alias Ubiquitin 0.13 Orthogroups_2024-Update
Solyc01g096290 No alias ubiquitin-ribosomal fusion protein 0.15 Orthogroups_2024-Update
Solyc08g008590 No alias ubiquitin-ribosomal fusion protein 0.08 Orthogroups_2024-Update
Solyc08g083120 No alias ubiquitin-ribosomal fusion protein 0.11 Orthogroups_2024-Update
Solyc12g098940 No alias Ubiquitin, putative (AHRD V3.3 *** B9RN74_RICCO) 0.05 Orthogroups_2024-Update
Solyc12g099030 No alias Ubiquitin, putative (AHRD V3.3 *** B9RN74_RICCO) 0.16 Orthogroups_2024-Update
Sopen03g022330 No alias Ubiquitin family 0.06 Orthogroups_2024-Update
Sopen08g004410 No alias Ubiquitin family 0.08 Orthogroups_2024-Update
evm.model.contig_2055.11 No alias (at3g52590 : 241.0) Ubiquitin extension protein;... 0.1 Orthogroups_2024-Update
evm.model.contig_3445.1 No alias no hits & (original description: no original description) 0.11 Orthogroups_2024-Update
evm.model.tig00022075.50 No alias (at3g52590 : 236.0) Ubiquitin extension protein;... 0.09 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA InterProScan predictions
MF GO:0005515 protein binding IEA InterProScan predictions
CC GO:0005840 ribosome IEA InterProScan predictions
BP GO:0006412 translation IEA InterProScan predictions
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR000626 Ubiquitin_dom 3 74
IPR002906 Ribosomal_S27a 102 147
No external refs found!