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  5. AC195864.3_FG017

AC195864.3_FG017


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_42_0000001 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: AC195864.3_FG017
Cluster HCCA clusters: Cluster_30

Target Alias Description ECC score Gene Family Method Actions
101245 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
105197 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Bradi2g11440 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
Glyma.08G117400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Glyma.19G026400 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Orthogroups_2024-Update
HORVU1Hr1G074220.1 No alias RNA editing factor *(MEF21) 0.03 Orthogroups_2024-Update
LOC_Os03g11700 No alias pentatricopeptide repeat domain containing protein,... 0.03 Orthogroups_2024-Update
Sobic.009G054200.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sopen09g001850 No alias PPR repeat 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005216 ion channel activity IEP Predicted GO
MF GO:0005516 calmodulin binding IEP Predicted GO
MF GO:0015075 ion transmembrane transporter activity IEP Predicted GO
MF GO:0015298 solute:cation antiporter activity IEP Predicted GO
MF GO:0015299 solute:proton antiporter activity IEP Predicted GO
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Predicted GO
MF GO:0022838 substrate-specific channel activity IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 175 205
IPR002885 Pentatricopeptide_repeat 372 401
IPR002885 Pentatricopeptide_repeat 406 434
IPR002885 Pentatricopeptide_repeat 343 369
IPR002885 Pentatricopeptide_repeat 270 299
IPR002885 Pentatricopeptide_repeat 443 471
IPR002885 Pentatricopeptide_repeat 153 172
No external refs found!