At1g07070

Description : 60S ribosomal protein L35a-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LMK0]

Gene families : OG_42_0001366 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001366_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Arabidopsis release: At1g07070
Cluster	HCCA clusters: Cluster_6

Target	Alias	Description	ECC score	Gene Family Method
At1g41880	No alias	60S ribosomal protein L35a-2...	0.03	Orthogroups_2024-Update
Bradi1g46840	No alias	Ribosomal protein L35Ae family protein	0.04	Orthogroups_2024-Update
Bradi3g60180	No alias	Ribosomal protein L35Ae family protein	0.03	Orthogroups_2024-Update
Bradi4g16690	No alias	Ribosomal protein L35Ae family protein	0.02	Orthogroups_2024-Update
Brara.B02119.1	No alias	component *(eL33) of large ribosomal-subunit (LSU) proteome	0.08	Orthogroups_2024-Update
Brara.D00376.1	No alias	component *(eL33) of large ribosomal-subunit (LSU) proteome	0.09	Orthogroups_2024-Update
Brara.G02281.1	No alias	component *(eL33) of large ribosomal-subunit (LSU) proteome	0.04	Orthogroups_2024-Update
Brara.G03191.1	No alias	component *(eL33) of large ribosomal-subunit (LSU) proteome	0.1	Orthogroups_2024-Update
Brara.I03824.1	No alias	component *(eL33) of large ribosomal-subunit (LSU) proteome	0.08	Orthogroups_2024-Update
Cre10.g459250	No alias	Ribosomal protein L35Ae family protein	0.09	Orthogroups_2024-Update
GRMZM2G181336	No alias	Ribosomal protein L35Ae family protein	0.03	Orthogroups_2024-Update
GRMZM5G890561	No alias	Ribosomal protein L35Ae family protein	0.06	Orthogroups_2024-Update
Glyma.05G132500	No alias	Ribosomal protein L35Ae family protein	0.05	Orthogroups_2024-Update
Glyma.08G087000	No alias	Ribosomal protein L35Ae family protein	0.07	Orthogroups_2024-Update
Glyma.14G062900	No alias	Ribosomal protein L35Ae family protein	0.08	Orthogroups_2024-Update
HORVU6Hr1G083120.2	No alias	component *(eL33) of large ribosomal-subunit (LSU) proteome	0.02	Orthogroups_2024-Update
HORVU7Hr1G031850.4	No alias	component *(eL33) of large ribosomal-subunit (LSU) proteome	0.07	Orthogroups_2024-Update
Kfl00148_0220	kfl00148_0220_v1.1	(at3g55750 : 81.6) Ribosomal protein L35Ae family...	0.03	Orthogroups_2024-Update
Mp1g11470.1	No alias	component RPL35a of LSU proteome component	0.05	Orthogroups_2024-Update
PSME_00007301-RA	No alias	(at1g74270 : 157.0) Ribosomal protein L35Ae family...	0.05	Orthogroups_2024-Update
Potri.008G059400	No alias	Ribosomal protein L35Ae family protein	0.09	Orthogroups_2024-Update
Potri.010G194200	No alias	Ribosomal protein L35Ae family protein	0.05	Orthogroups_2024-Update
Pp1s1_549V6	No alias	60s ribosomal protein	0.06	Orthogroups_2024-Update
Pp1s2_655V6	No alias	60s ribosomal protein	0.04	Orthogroups_2024-Update
Pp1s52_116V6	No alias	60s ribosomal protein	0.09	Orthogroups_2024-Update
Pp1s61_123V6	No alias	60s ribosomal protein	0.03	Orthogroups_2024-Update
Seita.4G043000.1	No alias	component *(eL33) of large ribosomal-subunit (LSU) proteome	0.09	Orthogroups_2024-Update
Sobic.002G179300.1	No alias	component *(eL33) of large ribosomal-subunit (LSU) proteome	0.07	Orthogroups_2024-Update
Sobic.004G322200.1	No alias	component *(eL33) of large ribosomal-subunit (LSU) proteome	0.02	Orthogroups_2024-Update
Sobic.010G070500.1	No alias	component *(eL33) of large ribosomal-subunit (LSU) proteome	0.06	Orthogroups_2024-Update
Solyc03g096360	No alias	60S ribosomal protein L35a (AHRD V3.3 *** B6VC50_VERFO)	0.06	Orthogroups_2024-Update
Solyc05g052810	No alias	60S ribosomal protein L35a (AHRD V3.3 *** B6VC50_VERFO)	0.05	Orthogroups_2024-Update
Sopen03g026480	No alias	Ribosomal protein L35Ae	0.07	Orthogroups_2024-Update
Sopen05g031320	No alias	Ribosomal protein L35Ae	0.04	Orthogroups_2024-Update
evm.model.contig_2130.2	No alias	(at1g74270 : 120.0) Ribosomal protein L35Ae family...	0.08	Orthogroups_2024-Update
evm.model.tig00020723.23	No alias	(at3g55750 : 148.0) Ribosomal protein L35Ae family...	0.08	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	InterProScan predictions
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005622	intracellular	IEA	InterProScan predictions
CC	GO:0005840	ribosome	IEA	InterProScan predictions
BP	GO:0006412	translation	IEA	InterProScan predictions
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000154	rRNA modification	IEP	Predicted GO
CC	GO:0000178	exosome (RNase complex)	IEP	Predicted GO
MF	GO:0000774	adenyl-nucleotide exchange factor activity	IEP	Predicted GO
BP	GO:0001510	RNA methylation	IEP	Predicted GO
MF	GO:0002161	aminoacyl-tRNA editing activity	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003937	IMP cyclohydrolase activity	IEP	Predicted GO
MF	GO:0004017	adenylate kinase activity	IEP	Predicted GO
MF	GO:0004488	methylenetetrahydrofolate dehydrogenase (NADP+) activity	IEP	Predicted GO
MF	GO:0004576	oligosaccharyl transferase activity	IEP	Predicted GO
MF	GO:0004643	phosphoribosylaminoimidazolecarboxamide formyltransferase activity	IEP	Predicted GO
MF	GO:0004797	thymidine kinase activity	IEP	Predicted GO
CC	GO:0005759	mitochondrial matrix	IEP	Predicted GO
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006351	transcription, DNA-templated	IEP	Predicted GO
BP	GO:0006457	protein folding	IEP	Predicted GO
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Predicted GO
MF	GO:0008649	rRNA methyltransferase activity	IEP	Predicted GO
BP	GO:0009451	RNA modification	IEP	Predicted GO
BP	GO:0016070	RNA metabolic process	IEP	Predicted GO
MF	GO:0016435	rRNA (guanine) methyltransferase activity	IEP	Predicted GO
MF	GO:0016646	oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor	IEP	Predicted GO
MF	GO:0016742	hydroxymethyl-, formyl- and related transferase activity	IEP	Predicted GO
MF	GO:0016776	phosphotransferase activity, phosphate group as acceptor	IEP	Predicted GO
BP	GO:0018130	heterocycle biosynthetic process	IEP	Predicted GO
MF	GO:0019136	deoxynucleoside kinase activity	IEP	Predicted GO
MF	GO:0019205	nucleobase-containing compound kinase activity	IEP	Predicted GO
MF	GO:0019206	nucleoside kinase activity	IEP	Predicted GO
MF	GO:0019238	cyclohydrolase activity	IEP	Predicted GO
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Predicted GO
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predicted GO
MF	GO:0030515	snoRNA binding	IEP	Predicted GO
CC	GO:0030684	preribosome	IEP	Predicted GO
BP	GO:0031167	rRNA methylation	IEP	Predicted GO
CC	GO:0031974	membrane-enclosed lumen	IEP	Predicted GO
CC	GO:0032040	small-subunit processome	IEP	Predicted GO
BP	GO:0032774	RNA biosynthetic process	IEP	Predicted GO
BP	GO:0034470	ncRNA processing	IEP	Predicted GO
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	Predicted GO
BP	GO:0036265	RNA (guanine-N7)-methylation	IEP	Predicted GO
BP	GO:0042254	ribosome biogenesis	IEP	Predicted GO
MF	GO:0042802	identical protein binding	IEP	Predicted GO
MF	GO:0042803	protein homodimerization activity	IEP	Predicted GO
CC	GO:0043233	organelle lumen	IEP	Predicted GO
BP	GO:0044085	cellular component biogenesis	IEP	Predicted GO
BP	GO:0046483	heterocycle metabolic process	IEP	Predicted GO
MF	GO:0046983	protein dimerization activity	IEP	Predicted GO
MF	GO:0050145	nucleoside monophosphate kinase activity	IEP	Predicted GO
MF	GO:0051087	chaperone binding	IEP	Predicted GO
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	Predicted GO
MF	GO:0060590	ATPase regulator activity	IEP	Predicted GO
CC	GO:0070013	intracellular organelle lumen	IEP	Predicted GO
BP	GO:0070475	rRNA base methylation	IEP	Predicted GO
BP	GO:0070476	rRNA (guanine-N7)-methylation	IEP	Predicted GO
BP	GO:0090304	nucleic acid metabolic process	IEP	Predicted GO
BP	GO:0097659	nucleic acid-templated transcription	IEP	Predicted GO
MF	GO:0140102	catalytic activity, acting on a rRNA	IEP	Predicted GO
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Predicted GO
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Predicted GO
CC	GO:1905354	exoribonuclease complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR001780	Ribosomal_L35A	12	106

External Links

No external refs found!

At1g07070

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation