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GRMZM2G006973


Description : XB3 ortholog 3 in Arabidopsis thaliana


Gene families : OG_42_0001910 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001910_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G006973
Cluster HCCA clusters: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
Brara.B01192.1 No alias E3 ubiquitin ligase *(XBAT3) 0.03 Orthogroups_2024-Update
HORVU1Hr1G048560.1 No alias E3 ubiquitin ligase *(XBAT3) 0.05 Orthogroups_2024-Update
HORVU7Hr1G011250.11 No alias Unknown function 0.02 Orthogroups_2024-Update
Potri.015G141400 No alias XB3 ortholog 3 in Arabidopsis thaliana 0.04 Orthogroups_2024-Update
Seita.1G347600.1 No alias E3 ubiquitin ligase *(XBAT3) 0.03 Orthogroups_2024-Update
Sopen07g002440 No alias Ankyrin repeats (3 copies) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
BP GO:0006766 vitamin metabolic process IEP Predicted GO
BP GO:0006767 water-soluble vitamin metabolic process IEP Predicted GO
BP GO:0006771 riboflavin metabolic process IEP Predicted GO
MF GO:0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity IEP Predicted GO
BP GO:0009110 vitamin biosynthetic process IEP Predicted GO
BP GO:0009231 riboflavin biosynthetic process IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Predicted GO
BP GO:0042726 flavin-containing compound metabolic process IEP Predicted GO
BP GO:0042727 flavin-containing compound biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002110 Ankyrin_rpt 200 228
IPR002110 Ankyrin_rpt 47 73
IPR020683 Ankyrin_rpt-contain_dom 82 181
No external refs found!