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  5. At1g11890

At1g11890


Description : SEC22 [Source:UniProtKB/TrEMBL;Acc:A0A178WBU4]


Gene families : OG_42_0002878 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002878_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Arabidopsis release: At1g11890
Cluster HCCA clusters: Cluster_114

Target Alias Description ECC score Gene Family Method Actions
HORVU5Hr1G035420.3 No alias R-type SEC22-group component of SNARE longin membrane... 0.03 Orthogroups_2024-Update
HORVU5Hr1G039540.1 No alias R-type SEC22-group component of SNARE longin membrane... 0.03 Orthogroups_2024-Update
HORVU5Hr1G104020.2 No alias R-type SEC22-group component of SNARE longin membrane... 0.03 Orthogroups_2024-Update
Mp2g11050.1 No alias SEC22-type R-type SNARE longin protein 0.02 Orthogroups_2024-Update
evm.model.contig_2024.27 No alias (at1g11890 : 207.0) member of SEC22 Gene Family;... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0016021 integral component of membrane IEA InterProScan predictions
BP GO:0016192 vesicle-mediated transport IEA InterProScan predictions
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Type GO Term Name Evidence Source
CC GO:0000502 proteasome complex IEP Predicted GO
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0001671 ATPase activator activity IEP Predicted GO
MF GO:0004583 dolichyl-phosphate-glucose-glycolipid alpha-glucosyltransferase activity IEP Predicted GO
MF GO:0004592 pantoate-beta-alanine ligase activity IEP Predicted GO
MF GO:0005509 calcium ion binding IEP Predicted GO
CC GO:0005783 endoplasmic reticulum IEP Predicted GO
CC GO:0005789 endoplasmic reticulum membrane IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006457 protein folding IEP Predicted GO
BP GO:0006488 dolichol-linked oligosaccharide biosynthetic process IEP Predicted GO
BP GO:0006490 oligosaccharide-lipid intermediate biosynthetic process IEP Predicted GO
BP GO:0006575 cellular modified amino acid metabolic process IEP Predicted GO
BP GO:0006766 vitamin metabolic process IEP Predicted GO
BP GO:0006767 water-soluble vitamin metabolic process IEP Predicted GO
BP GO:0009110 vitamin biosynthetic process IEP Predicted GO
BP GO:0009894 regulation of catabolic process IEP Predicted GO
BP GO:0015939 pantothenate metabolic process IEP Predicted GO
BP GO:0015940 pantothenate biosynthetic process IEP Predicted GO
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP Predicted GO
MF GO:0016881 acid-amino acid ligase activity IEP Predicted GO
MF GO:0030234 enzyme regulator activity IEP Predicted GO
MF GO:0031072 heat shock protein binding IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
BP GO:0042176 regulation of protein catabolic process IEP Predicted GO
BP GO:0042364 water-soluble vitamin biosynthetic process IEP Predicted GO
BP GO:0042398 cellular modified amino acid biosynthetic process IEP Predicted GO
CC GO:0044427 chromosomal part IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
MF GO:0051082 unfolded protein binding IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
BP GO:0051246 regulation of protein metabolic process IEP Predicted GO
MF GO:0060590 ATPase regulator activity IEP Predicted GO
MF GO:0098772 molecular function regulator IEP Predicted GO
CC GO:1905368 peptidase complex IEP Predicted GO
CC GO:1905369 endopeptidase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001388 Synaptobrevin 133 213
IPR010908 Longin_dom 37 118
No external refs found!