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  5. GRMZM2G042443

GRMZM2G042443


Description : RNA-dependent RNA polymerase 2


Gene families : OG_42_0002271 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002271_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G042443
Cluster HCCA clusters: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
Sobic.006G111200.1 No alias RNA polymerase-IV-dependent siRNA polymerase *(RDR2) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003968 RNA-directed 5'-3' RNA polymerase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0003852 2-isopropylmalate synthase activity IEP Predicted GO
MF GO:0003885 D-arabinono-1,4-lactone oxidase activity IEP Predicted GO
BP GO:0006260 DNA replication IEP Predicted GO
BP GO:0006281 DNA repair IEP Predicted GO
BP GO:0006310 DNA recombination IEP Predicted GO
BP GO:0006551 leucine metabolic process IEP Predicted GO
BP GO:0006974 cellular response to DNA damage stimulus IEP Predicted GO
BP GO:0009081 branched-chain amino acid metabolic process IEP Predicted GO
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Predicted GO
BP GO:0009098 leucine biosynthetic process IEP Predicted GO
MF GO:0016597 amino acid binding IEP Predicted GO
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP Predicted GO
MF GO:0016899 oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor IEP Predicted GO
MF GO:0017056 structural constituent of nuclear pore IEP Predicted GO
CC GO:0030915 Smc5-Smc6 complex IEP Predicted GO
MF GO:0031406 carboxylic acid binding IEP Predicted GO
BP GO:0032780 negative regulation of ATPase activity IEP Predicted GO
BP GO:0033554 cellular response to stress IEP Predicted GO
MF GO:0042030 ATPase inhibitor activity IEP Predicted GO
BP GO:0043086 negative regulation of catalytic activity IEP Predicted GO
MF GO:0043177 organic acid binding IEP Predicted GO
BP GO:0043462 regulation of ATPase activity IEP Predicted GO
BP GO:0044092 negative regulation of molecular function IEP Predicted GO
BP GO:0051336 regulation of hydrolase activity IEP Predicted GO
BP GO:0051346 negative regulation of hydrolase activity IEP Predicted GO
BP GO:0051716 cellular response to stimulus IEP Predicted GO
CC GO:0106068 SUMO ligase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR007855 RNA-dep_RNA_pol_euk-typ 379 957
No external refs found!