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  5. GRMZM2G053210

GRMZM2G053210


Description : RING/U-box superfamily protein


Gene families : OG_42_0000043 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000043_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G053210
Cluster HCCA clusters: Cluster_48

Target Alias Description ECC score Gene Family Method Actions
Bradi3g34010 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
LOC_Os03g26420 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os12g04090 No alias zinc finger, C3HC4 type domain containing protein 0.03 Orthogroups_2024-Update
MA_110029g0010 No alias (at1g55530 : 173.0) RING/U-box superfamily protein;... 0.03 Orthogroups_2024-Update
Potri.006G217600 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Potri.019G086500 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Seita.2G401300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.3G157000.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G211900.1 No alias signal transducer of abscisic acid perception *(AIP2) 0.03 Orthogroups_2024-Update
Sobic.004G074600.2 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.007G224300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sopen08g021220 No alias Ring finger domain 0.04 Orthogroups_2024-Update
evm.model.contig_4465.8 No alias (at3g19950 : 80.5) RING/U-box superfamily protein;... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0061630 ubiquitin protein ligase activity IEA InterProScan predictions
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Type GO Term Name Evidence Source
MF GO:0004664 prephenate dehydratase activity IEP Predicted GO
BP GO:0006558 L-phenylalanine metabolic process IEP Predicted GO
BP GO:0008652 cellular amino acid biosynthetic process IEP Predicted GO
BP GO:0009072 aromatic amino acid family metabolic process IEP Predicted GO
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Predicted GO
BP GO:0009094 L-phenylalanine biosynthetic process IEP Predicted GO
BP GO:0009095 aromatic amino acid family biosynthetic process, prephenate pathway IEP Predicted GO
MF GO:0016835 carbon-oxygen lyase activity IEP Predicted GO
MF GO:0016836 hydro-lyase activity IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016872 intramolecular lyase activity IEP Predicted GO
BP GO:1901605 alpha-amino acid metabolic process IEP Predicted GO
BP GO:1901607 alpha-amino acid biosynthetic process IEP Predicted GO
BP GO:1902221 erythrose 4-phosphate/phosphoenolpyruvate family amino acid metabolic process IEP Predicted GO
BP GO:1902223 erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 178 220
IPR039525 RNF126-like_zinc-ribbon 9 44
No external refs found!