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  5. GRMZM2G054193

GRMZM2G054193


Description : vesicle-associated membrane protein 726


Gene families : OG_42_0000264 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000264_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Zea release: GRMZM2G054193
Cluster HCCA clusters: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
Bradi1g47940 No alias vesicle-associated membrane protein 713 0.02 Orthogroups_2024-Update
Brara.A00573.1 No alias R-type VAMP7-group component of SNARE longin membrane... 0.03 Orthogroups_2024-Update
GRMZM2G008919 No alias vesicle-associated membrane protein 726 0.03 Orthogroups_2024-Update
GRMZM2G104505 No alias vesicle-associated membrane protein 726 0.03 Orthogroups_2024-Update
Glyma.13G160500 No alias vesicle-associated membrane protein 713 0.02 Orthogroups_2024-Update
Kfl00515_0100 kfl00515_0100_v1.1 (at2g32670 : 271.0) member of Synaptobrevin -like... 0.01 Orthogroups_2024-Update
Mp8g00880.1 No alias VAMP7-type R-type SNARE longin protein 0.02 Orthogroups_2024-Update
Potri.015G118300 No alias vesicle-associated membrane protein 726 0.04 Orthogroups_2024-Update
Pp1s219_102V6 No alias vesicle-associated membrane 0.02 Orthogroups_2024-Update
Seita.3G407800.1 No alias R-type component *(VAMP721/VAMP722) of SNARE cell-plate... 0.03 Orthogroups_2024-Update
Sobic.004G334900.1 No alias R-type VAMP7-group component of SNARE longin membrane... 0.02 Orthogroups_2024-Update
Sobic.007G168600.4 No alias R-type VAMP7-group component of SNARE longin membrane... 0.02 Orthogroups_2024-Update
evm.model.contig_2286.28 No alias no hits & (original description: no original description) 0.01 Orthogroups_2024-Update
evm.model.tig00000880.46 No alias (at5g22360 : 152.0) Member of Synaptobrevin-like... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
CC GO:0016021 integral component of membrane IEA InterProScan predictions
BP GO:0016192 vesicle-mediated transport IEA InterProScan predictions
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Type GO Term Name Evidence Source
BP GO:0006383 transcription by RNA polymerase III IEP Predicted GO
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Predicted GO
BP GO:0007030 Golgi organization IEP Predicted GO
InterPro domains Description Start Stop
IPR010908 Longin_dom 32 110
IPR001388 Synaptobrevin 129 215
No external refs found!